6RSK
Cytochrome c co-crystallized with 20 eq. sulfonato-calix[8]arene and 15 eq. spermine - structure II
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005758 | cellular_component | mitochondrial intermembrane space |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
A | 1901612 | molecular_function | cardiolipin binding |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005758 | cellular_component | mitochondrial intermembrane space |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
B | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue HEC A 201 |
Chain | Residue |
A | ARG13 |
A | GLY41 |
A | TYR46 |
A | TYR48 |
A | THR49 |
A | ASN52 |
A | TRP59 |
A | MET64 |
A | TYR67 |
A | LEU68 |
A | THR78 |
A | CYS14 |
A | LYS79 |
A | PHE82 |
A | LEU94 |
A | HOH331 |
A | HOH334 |
A | HOH338 |
A | CYS17 |
A | HIS18 |
A | VAL28 |
A | GLY29 |
A | PRO30 |
A | ILE35 |
A | SER40 |
site_id | AC2 |
Number of Residues | 32 |
Details | binding site for residue EVB A 202 |
Chain | Residue |
A | LYS11 |
A | THR12 |
A | LEU15 |
A | GLN16 |
A | THR19 |
A | GLU21 |
A | GLY24 |
A | PRO25 |
A | LYS27 |
A | HIS39 |
A | GLY41 |
A | GLN42 |
A | TYR46 |
A | TYR48 |
A | ASP50 |
A | ILE53 |
A | LYS54 |
A | ASN56 |
A | HOH303 |
A | HOH315 |
A | HOH316 |
A | HOH321 |
A | HOH345 |
A | HOH350 |
A | HOH352 |
A | HOH353 |
A | HOH354 |
A | HOH359 |
A | HOH374 |
A | HOH375 |
A | HOH382 |
B | LYS22 |
site_id | AC3 |
Number of Residues | 26 |
Details | binding site for residue EVB A 203 |
Chain | Residue |
A | ALA-1 |
A | GLY1 |
A | ALA3 |
A | LYS4 |
A | LYS4 |
A | LYS5 |
A | THR8 |
A | THR96 |
A | TYR97 |
A | LYS99 |
A | LYS100 |
A | SPM211 |
A | SPM212 |
A | HOH305 |
A | HOH305 |
A | HOH306 |
A | HOH310 |
A | HOH311 |
A | HOH337 |
A | HOH343 |
A | HOH344 |
A | HOH347 |
A | HOH359 |
A | HOH361 |
A | HOH362 |
A | HOH368 |
site_id | AC4 |
Number of Residues | 12 |
Details | binding site for residue EVB A 204 |
Chain | Residue |
A | ASN70 |
A | LYS72 |
A | LYS73 |
A | LYS79 |
A | MET80 |
A | ALA81 |
A | PHE82 |
A | GLY83 |
A | SO4206 |
A | HOH336 |
B | EVB203 |
B | SPM210 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 205 |
Chain | Residue |
A | HOH329 |
A | ARG13 |
A | GLY84 |
A | LEU85 |
A | LYS86 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 206 |
Chain | Residue |
A | ARG13 |
A | ALA81 |
A | PHE82 |
A | GLY83 |
A | EVB204 |
A | HOH349 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 207 |
Chain | Residue |
A | ASN70 |
A | LYS86 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 208 |
Chain | Residue |
A | GLU-4 |
A | GLU88 |
A | ARG91 |
A | HOH342 |
site_id | AC9 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 209 |
Chain | Residue |
A | LYS55 |
A | HOH333 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 210 |
Chain | Residue |
A | GLU21 |
A | LYS22 |
A | HOH309 |
A | HOH312 |
A | HOH357 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue SPM A 211 |
Chain | Residue |
A | EVB203 |
A | HOH328 |
site_id | AD3 |
Number of Residues | 1 |
Details | binding site for residue SPM A 212 |
Chain | Residue |
A | EVB203 |
site_id | AD4 |
Number of Residues | 24 |
Details | binding site for residue EVB B 202 |
Chain | Residue |
A | LYS22 |
B | LYS11 |
B | LEU15 |
B | GLN16 |
B | THR19 |
B | GLU21 |
B | GLY24 |
B | PRO25 |
B | LYS27 |
B | HIS39 |
B | GLY41 |
B | GLN42 |
B | TYR46 |
B | SER47 |
B | TYR48 |
B | ASP50 |
B | ILE53 |
B | LYS54 |
B | ASN56 |
B | HOH303 |
B | HOH310 |
B | HOH313 |
B | HOH324 |
B | HOH328 |
site_id | AD5 |
Number of Residues | 11 |
Details | binding site for residue EVB B 203 |
Chain | Residue |
A | EVB204 |
B | ASN70 |
B | LYS72 |
B | MET80 |
B | ALA81 |
B | PHE82 |
B | GLY83 |
B | SO4206 |
B | SPM210 |
B | HOH326 |
B | HOH327 |
site_id | AD6 |
Number of Residues | 10 |
Details | binding site for residue EVB B 204 |
Chain | Residue |
B | ALA-1 |
B | GLY1 |
B | ALA3 |
B | LYS4 |
B | ALA7 |
B | THR96 |
B | TYR97 |
B | LYS100 |
B | SPM211 |
B | HOH317 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 205 |
Chain | Residue |
B | ARG13 |
B | GLY84 |
B | LYS86 |
site_id | AD8 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 206 |
Chain | Residue |
B | ARG13 |
B | PHE82 |
B | GLY83 |
B | GLY84 |
B | EVB203 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 207 |
Chain | Residue |
B | GLU21 |
B | LYS22 |
B | HOH305 |
site_id | AE1 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 208 |
Chain | Residue |
B | SPM211 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 209 |
Chain | Residue |
B | LYS55 |
site_id | AE3 |
Number of Residues | 2 |
Details | binding site for residue SPM B 210 |
Chain | Residue |
A | EVB204 |
B | EVB203 |
site_id | AE4 |
Number of Residues | 2 |
Details | binding site for residue SPM B 211 |
Chain | Residue |
B | EVB204 |
B | SO4208 |
site_id | AE5 |
Number of Residues | 25 |
Details | binding site for Di-peptide HEC B 201 and CYS B 17 |
Chain | Residue |
B | ARG13 |
B | CYS14 |
B | LEU15 |
B | GLN16 |
B | HIS18 |
B | LYS27 |
B | VAL28 |
B | GLY29 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | PHE82 |
B | LEU94 |
B | HOH304 |
B | HOH306 |
B | HOH314 |
site_id | AE6 |
Number of Residues | 24 |
Details | binding site for Di-peptide HEC B 201 and CYS B 14 |
Chain | Residue |
B | PHE10 |
B | ARG13 |
B | LEU15 |
B | GLN16 |
B | CYS17 |
B | HIS18 |
B | VAL28 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | PHE82 |
B | LEU94 |
B | HOH304 |
B | HOH306 |
B | HOH314 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | CYS14 | |
A | CYS17 | |
B | CYS14 | |
B | CYS17 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | HIS18 | |
A | MET80 | |
B | HIS18 | |
B | MET80 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO |
Chain | Residue | Details |
A | LYS72 | |
B | LYS72 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544 |
Chain | Residue | Details |
A | LYS73 | |
B | LYS73 |