Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6RF8

Cryo-EM structure of the N-terminal DC repeat (NDC) of NDC-NDC chimera (human sequence) bound to 13-protofilament GDP-microtubule

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000226	biological_process	microtubule cytoskeleton organization
A	0000278	biological_process	mitotic cell cycle
A	0003924	molecular_function	GTPase activity
A	0005200	molecular_function	structural constituent of cytoskeleton
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0005856	cellular_component	cytoskeleton
A	0005874	cellular_component	microtubule
A	0007017	biological_process	microtubule-based process
A	0015630	cellular_component	microtubule cytoskeleton
A	0016787	molecular_function	hydrolase activity
A	0046872	molecular_function	metal ion binding
B	0000226	biological_process	microtubule cytoskeleton organization
B	0000278	biological_process	mitotic cell cycle
B	0003924	molecular_function	GTPase activity
B	0005200	molecular_function	structural constituent of cytoskeleton
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0005856	cellular_component	cytoskeleton
B	0005874	cellular_component	microtubule
B	0007017	biological_process	microtubule-based process
B	0007399	biological_process	nervous system development
B	0015630	cellular_component	microtubule cytoskeleton
B	0046872	molecular_function	metal ion binding
B	0046982	molecular_function	protein heterodimerization activity
B	1902669	biological_process	positive regulation of axon guidance
N	0035556	biological_process	intracellular signal transduction
a	0000226	biological_process	microtubule cytoskeleton organization
a	0000278	biological_process	mitotic cell cycle
a	0003924	molecular_function	GTPase activity
a	0005200	molecular_function	structural constituent of cytoskeleton
a	0005525	molecular_function	GTP binding
a	0005737	cellular_component	cytoplasm
a	0005829	cellular_component	cytosol
a	0005856	cellular_component	cytoskeleton
a	0005874	cellular_component	microtubule
a	0007017	biological_process	microtubule-based process
a	0015630	cellular_component	microtubule cytoskeleton
a	0016787	molecular_function	hydrolase activity
a	0046872	molecular_function	metal ion binding
b	0000226	biological_process	microtubule cytoskeleton organization
b	0000278	biological_process	mitotic cell cycle
b	0003924	molecular_function	GTPase activity
b	0005200	molecular_function	structural constituent of cytoskeleton
b	0005525	molecular_function	GTP binding
b	0005737	cellular_component	cytoplasm
b	0005856	cellular_component	cytoskeleton
b	0005874	cellular_component	microtubule
b	0007017	biological_process	microtubule-based process
b	0007399	biological_process	nervous system development
b	0015630	cellular_component	microtubule cytoskeleton
b	0046872	molecular_function	metal ion binding
b	0046982	molecular_function	protein heterodimerization activity
b	1902669	biological_process	positive regulation of axon guidance

Functional Information from PDB Data

site_id	AC1
Number of Residues	13
Details	binding site for residue GDP b 501

Chain	Residue
a	LEU248
b	ASP177
b	ASN204
b	TYR222
b	ASN226
b	GLY10
b	GLN11
b	CYS12
b	GLN15
b	GLY141
b	GLY142
b	THR143
b	GLY144

site_id	AC2
Number of Residues	16
Details	binding site for residue GTP A 501

Chain	Residue
A	GLY10
A	GLN11
A	ALA12
A	GLN15
A	GLU71
A	ASP98
A	SER140
A	GLY143
A	GLY144
A	THR145
A	ILE171
A	ASN206
A	TYR224
A	ASN228
A	ILE231
A	MG502

site_id	AC3
Number of Residues	2
Details	binding site for residue MG A 502

Chain	Residue
A	GLN11
A	GTP501

site_id	AC4
Number of Residues	12
Details	binding site for residue GDP B 501

Chain	Residue
B	GLY10
B	GLN11
B	CYS12
B	GLN15
B	GLY141
B	GLY142
B	THR143
B	GLY144
B	ASP177
B	ASN204
B	TYR222
B	ASN226

site_id	AC5
Number of Residues	16
Details	binding site for residue GTP a 501

Chain	Residue
a	GLY10
a	GLN11
a	ALA12
a	GLN15
a	GLU71
a	ASP98
a	SER140
a	GLY143
a	GLY144
a	THR145
a	ILE171
a	ASN206
a	TYR224
a	ASN228
a	ILE231
a	MG502

site_id	AC6
Number of Residues	2
Details	binding site for residue MG a 502

Chain	Residue
a	GLN11
a	GTP501

Functional Information from PROSITE/UniProt

site_id	PS00227
Number of Residues	7
Details	TUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG

Chain	Residue	Details
A	GLY142-GLY148
b	GLY140-GLY146

site_id	PS00228
Number of Residues	4
Details	TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI

Chain	Residue	Details
b	MET1-ILE4

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	ACT_SITE: ACT_SITE => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	PRO263
B	GLY142
B	THR143
B	GLY144
B	ASN204
B	ASN226
a	PRO263
b	GLY142
b	THR143
b	GLY144
b	ASN204
b	ASN226
B	GLN11
B	SER138

site_id	SWS_FT_FI2
Number of Residues	16
Details	BINDING: BINDING => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	GLN11
a	THR80
a	PHE149
a	LEU153
a	MET154
a	ILE188
a	ARG215
a	SER237
A	THR80
A	PHE149
A	LEU153
A	MET154
A	ILE188
A	ARG215
A	SER237
a	GLN11

site_id	SWS_FT_FI3
Number of Residues	2
Details	MOD_RES: N6-acetyllysine; alternate => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	PHE49
a	PHE49

site_id	SWS_FT_FI4
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	GLY57
A	SER241
a	GLY57
a	SER241

site_id	SWS_FT_FI5
Number of Residues	2
Details	MOD_RES: 3'-nitrotyrosine => ECO:0000250\|UniProtKB:P68373

Chain	Residue	Details
A	ILE291
a	ILE291

site_id	SWS_FT_FI6
Number of Residues	2
Details	MOD_RES: Omega-N-methylarginine => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	PRO348
a	PRO348

site_id	SWS_FT_FI7
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:P68373

Chain	Residue	Details
b	THR285
b	THR290
B	THR285
B	THR290

site_id	SWS_FT_FI8
Number of Residues	6
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250\|UniProtKB:P68363

Chain	Residue	Details
A	ILE335
B	ARG318
A	SER379
a	ILE335
a	SER379

site_id	SWS_FT_FI9
Number of Residues	2
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250\|UniProtKB:P07437

Chain	Residue	Details
b	LYS58
B	LYS58

site_id	SWS_FT_FI10
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250\|UniProtKB:P07437

Chain	Residue	Details
b	LYS324
B	LYS324

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)