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6RB7

Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008747molecular_functionN-acetylneuraminate lyase activity
A0016829molecular_functionlyase activity
A0019262biological_processN-acetylneuraminate catabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008747molecular_functionN-acetylneuraminate lyase activity
B0016829molecular_functionlyase activity
B0019262biological_processN-acetylneuraminate catabolic process
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0008747molecular_functionN-acetylneuraminate lyase activity
E0016829molecular_functionlyase activity
E0019262biological_processN-acetylneuraminate catabolic process
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0008747molecular_functionN-acetylneuraminate lyase activity
F0016829molecular_functionlyase activity
F0019262biological_processN-acetylneuraminate catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue TRS A 401
ChainResidue
AASP194
AGLU195
AGLY211
AMET256
ATYR257
AHOH517
AHOH661

site_idAC2
Number of Residues6
Detailsbinding site for residue GOL A 402
ChainResidue
AHOH517
AHOH745
AHOH779
BHOH836
AASN255
AHOH515

site_idAC3
Number of Residues4
Detailsbinding site for residue PEG A 403
ChainResidue
AARG236
ATYR240
AHOH502
EGLU206

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 404
ChainResidue
AGLU66
AMET69
AHOH556
AHOH718

site_idAC5
Number of Residues4
Detailsbinding site for residue BCN A 405
ChainResidue
AALA229
AGLY230
AHOH706
EGLY230

site_idAC6
Number of Residues12
Detailsbinding site for residue GOL A 406
ChainResidue
AHIS114
APRO142
AGLN143
AGLY146
AHOH503
AHOH519
AHOH752
BHIS114
BGLN143
BGLY146
BHOH544
BHOH708

site_idAC7
Number of Residues5
Detailsbinding site for residue MG A 407
ChainResidue
AASN255
APRO280
AHOH677
BPRO116
BHOH769

site_idAC8
Number of Residues7
Detailsbinding site for residue TRS B 401
ChainResidue
BASP194
BGLU195
BGLY211
BTHR212
BMET256
BTYR257
BHOH675

site_idAC9
Number of Residues4
Detailsbinding site for residue GOL B 402
ChainResidue
AHOH766
BASN255
BHOH549
BHOH730

site_idAD1
Number of Residues5
Detailsbinding site for residue MG B 403
ChainResidue
APRO116
AHOH768
BASN255
BPRO280
BHOH701

site_idAD2
Number of Residues9
Detailsbinding site for residue TRS E 401
ChainResidue
EASP194
EGLU195
EGLY211
ETHR212
EMET256
ETYR257
EHOH516
EHOH638
EHOH829

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL E 402
ChainResidue
EASN255
EHOH516
EHOH726
EHOH736

site_idAD4
Number of Residues5
Detailsbinding site for residue MG E 403
ChainResidue
EASN255
EPRO280
EHOH693
EHOH736
FPRO116

site_idAD5
Number of Residues6
Detailsbinding site for residue TRS F 401
ChainResidue
FASP194
FGLU195
FGLY211
FMET256
FTYR257
FHOH676

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL F 402
ChainResidue
EPHE113
FASN255
FTYR257
FHOH516
FHOH732

site_idAD7
Number of Residues3
Detailsbinding site for residue PEG F 403
ChainResidue
FGLY74
FLYS75
FHOH742

site_idAD8
Number of Residues3
Detailsbinding site for residue PEG F 404
ChainResidue
FARG236
FHOH513
FHOH601

site_idAD9
Number of Residues5
Detailsbinding site for residue MG F 405
ChainResidue
EPRO116
EHOH764
FASN255
FPRO280
FHOH647

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01237
ChainResidueDetails
ATYR139
BTYR139
ETYR139
FTYR139

site_idSWS_FT_FI2
Number of Residues4
DetailsACT_SITE: Schiff-base intermediate with substrate => ECO:0000255|HAMAP-Rule:MF_01237
ChainResidueDetails
AALA167
BALA167
EALA167
FALA167

site_idSWS_FT_FI3
Number of Residues28
DetailsBINDING: BINDING => ECO:0000269|PubMed:31636419, ECO:0007744|PDB:6RD1
ChainResidueDetails
ASER49
ASER50
ASER169
AGLY192
AASP194
AGLU195
AGLY211
BSER49
BSER50
BSER169
BGLY192
BASP194
BGLU195
BGLY211
ESER49
ESER50
ESER169
EGLY192
EASP194
EGLU195
EGLY211
FSER49
FSER50
FSER169
FGLY192
FASP194
FGLU195
FGLY211

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PDB entries from 2024-06-12

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