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6QUW

Crystal Structure of KRAS-G12D in Complex with Natural Product-Like Compound 9b

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0007165biological_processsignal transduction
A0016020cellular_componentmembrane
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0007165biological_processsignal transduction
B0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues28
Detailsbinding site for residue GCP A 201
ChainResidue
AASP12
AASP30
AGLU31
APRO34
ATHR35
AGLY60
AASN116
ALYS117
AASP119
ALEU120
ASER145
AGLY13
AALA146
ALYS147
AMG202
AHOH311
AHOH320
AHOH346
AHOH351
AHOH357
AHOH386
AVAL14
AGLY15
ALYS16
ASER17
AALA18
APHE28
AVAL29

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 202
ChainResidue
ASER17
ATHR35
AGCP201
AHOH311
AHOH346

site_idAC3
Number of Residues29
Detailsbinding site for residue GCP B 201
ChainResidue
BALA11
BASP12
BGLY13
BVAL14
BGLY15
BLYS16
BSER17
BALA18
BPHE28
BVAL29
BASP30
BGLU31
BTYR32
BPRO34
BTHR35
BGLY60
BASN116
BLYS117
BASP119
BLEU120
BSER145
BALA146
BMG202
BHOH304
BHOH305
BHOH319
BHOH353
BHOH383
BHOH388

site_idAC4
Number of Residues5
Detailsbinding site for residue MG B 202
ChainResidue
BSER17
BTHR35
BGCP201
BHOH304
BHOH319

site_idAC5
Number of Residues5
Detailsbinding site for residue JJQ B 203
ChainResidue
BVAL7
BSER39
BASP54
BLEU56
BTHR74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:22431598, ECO:0000269|PubMed:22566140
ChainResidueDetails
AGLY10
AVAL29
AALA59
AASN116
BGLY10
BVAL29
BALA59
BASN116

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N-acetylmethionine; in GTPase KRas; alternate => ECO:0000269|Ref.17
ChainResidueDetails
AMET1
BMET1

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N-acetylthreonine; in GTPase KRas, N-terminally processed => ECO:0000269|Ref.17
ChainResidueDetails
ATHR2
BTHR2

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22711838
ChainResidueDetails
ALYS104
BLYS104

site_idSWS_FT_FI5
Number of Residues2
DetailsCARBOHYD: (Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL => ECO:0000269|PubMed:19744486
ChainResidueDetails
ATHR35
BTHR35

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PDB entries from 2024-07-17

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