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6QTP

2.37A structure of gepotidacin with S.aureus DNA gyrase and uncleaved DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006259biological_processDNA metabolic process
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue MN B 701
ChainResidue
BGLU435
BASP508
BASP510
BHOH806
BHOH810
BHOH825
BHOH831
EDA9
EHOH223

site_idAC2
Number of Residues2
Detailsbinding site for residue NA B 702
ChainResidue
BGLU427
BGLU428

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 501
ChainResidue
AASP96
APHE97
AMET113
APRO219
ATHR220
AARG485

site_idAC4
Number of Residues7
Detailsbinding site for residue MN D 701
ChainResidue
ATYR123
AHOH609
DGLU435
DASP508
DHOH807
FDC8
FDA9

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 C 501
ChainResidue
AARG429
CARG429
CHOH739
CHOH800

site_idAC6
Number of Residues14
Detailsbinding site for residue JHN E 101
ChainResidue
AALA68
AMET75
AASP83
AMET121
AHOH797
CALA68
CMET75
CASP83
CMET121
EDG10
EDC11
EHOH235
FDG10
FDC11

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897
ChainResidueDetails
ATYR123
CTYR123
BASP510
DGLU435
DASP508
DASP510

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS460
BASN463
DLYS460
DASN463

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PDB entries from 2024-11-06

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