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6QR2

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue JQB A 301
ChainResidue
APRO83
AILE133
AGLY134
ATYR136
AVAL137
ALEU138
AASN139
AGLY140
AGLY141
AALA144
AHOH446
ATHR84
BARG154
BGLU180
APRO85
AGLY109
AARG110
ATYR111
AGLU112
AVAL131
ASER132

site_idAC2
Number of Residues2
Detailsbinding site for residue SO4 A 302
ChainResidue
AARG186
AHOH401

site_idAC3
Number of Residues10
Detailsbinding site for residue SO4 A 303
ChainResidue
AALA123
AARG125
AMET126
AARG127
ATHR185
AARG186
AHOH415
BASP50
BSER51
BTYR53

site_idAC4
Number of Residues19
Detailsbinding site for residue JQB B 301
ChainResidue
AARG154
BPRO83
BTHR84
BPRO85
BGLY109
BARG110
BTYR111
BGLU112
BVAL131
BSER132
BILE133
BGLY134
BTYR136
BVAL137
BLEU138
BGLY140
BGLY141
BALA144
BHOH402

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 B 302
ChainResidue
BARG129
BHOH406

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

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PDB entries from 2024-07-17

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