Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6QOK

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 14 (Methyl 2-aminopyridine-4-carboxylate)

Functional Information from GO Data
ChainGOidnamespacecontents
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0002939biological_processtRNA N1-guanine methylation
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue J9T A 301
ChainResidue
APRO83
ALEU138
AGLY140
AGLY141
AALA144
ATHR84
APRO85
AGLY109
ATYR111
ASER132
AILE133
AGLY134
ATYR136

site_idAC2
Number of Residues8
Detailsbinding site for residue SO4 A 302
ChainResidue
AALA123
AMET126
ATHR185
AARG186
AHOH411
BASP50
BSER51
BTYR53

site_idAC3
Number of Residues10
Detailsbinding site for residue J9T B 301
ChainResidue
BPRO83
BTHR84
BPRO85
BSER132
BILE133
BGLY134
BTYR136
BLEU138
BGLY140
BGLY141

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 B 302
ChainResidue
BARG127
BARG129
BHOH430

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon