6QLV
Crystal structure of W200H UbiX in complex with a geranyl-FMN N5 adduct
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0004659 | molecular_function | prenyltransferase activity |
A | 0016829 | molecular_function | lyase activity |
A | 0106141 | molecular_function | flavin prenyltransferase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004659 | molecular_function | prenyltransferase activity |
B | 0016829 | molecular_function | lyase activity |
B | 0106141 | molecular_function | flavin prenyltransferase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0004659 | molecular_function | prenyltransferase activity |
C | 0016829 | molecular_function | lyase activity |
C | 0106141 | molecular_function | flavin prenyltransferase activity |
D | 0000166 | molecular_function | nucleotide binding |
D | 0003824 | molecular_function | catalytic activity |
D | 0004659 | molecular_function | prenyltransferase activity |
D | 0016829 | molecular_function | lyase activity |
D | 0106141 | molecular_function | flavin prenyltransferase activity |
E | 0000166 | molecular_function | nucleotide binding |
E | 0003824 | molecular_function | catalytic activity |
E | 0004659 | molecular_function | prenyltransferase activity |
E | 0016829 | molecular_function | lyase activity |
E | 0106141 | molecular_function | flavin prenyltransferase activity |
F | 0000166 | molecular_function | nucleotide binding |
F | 0003824 | molecular_function | catalytic activity |
F | 0004659 | molecular_function | prenyltransferase activity |
F | 0016829 | molecular_function | lyase activity |
F | 0106141 | molecular_function | flavin prenyltransferase activity |
G | 0000166 | molecular_function | nucleotide binding |
G | 0003824 | molecular_function | catalytic activity |
G | 0004659 | molecular_function | prenyltransferase activity |
G | 0016829 | molecular_function | lyase activity |
G | 0106141 | molecular_function | flavin prenyltransferase activity |
H | 0000166 | molecular_function | nucleotide binding |
H | 0003824 | molecular_function | catalytic activity |
H | 0004659 | molecular_function | prenyltransferase activity |
H | 0016829 | molecular_function | lyase activity |
H | 0106141 | molecular_function | flavin prenyltransferase activity |
I | 0000166 | molecular_function | nucleotide binding |
I | 0003824 | molecular_function | catalytic activity |
I | 0004659 | molecular_function | prenyltransferase activity |
I | 0016829 | molecular_function | lyase activity |
I | 0106141 | molecular_function | flavin prenyltransferase activity |
J | 0000166 | molecular_function | nucleotide binding |
J | 0003824 | molecular_function | catalytic activity |
J | 0004659 | molecular_function | prenyltransferase activity |
J | 0016829 | molecular_function | lyase activity |
J | 0106141 | molecular_function | flavin prenyltransferase activity |
K | 0000166 | molecular_function | nucleotide binding |
K | 0003824 | molecular_function | catalytic activity |
K | 0004659 | molecular_function | prenyltransferase activity |
K | 0016829 | molecular_function | lyase activity |
K | 0106141 | molecular_function | flavin prenyltransferase activity |
L | 0000166 | molecular_function | nucleotide binding |
L | 0003824 | molecular_function | catalytic activity |
L | 0004659 | molecular_function | prenyltransferase activity |
L | 0016829 | molecular_function | lyase activity |
L | 0106141 | molecular_function | flavin prenyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | binding site for residue HZZ A 301 |
Chain | Residue |
A | TRP84 |
J | ARG139 |
J | GLU140 |
J | FMN301 |
A | SER90 |
A | GLY91 |
A | ARG122 |
A | LYS129 |
A | HOH419 |
E | TYR169 |
E | ARG185 |
E | HOH429 |
site_id | AC2 |
Number of Residues | 20 |
Details | binding site for residue FMN A 302 |
Chain | Residue |
A | THR12 |
A | GLY13 |
A | SER15 |
A | SER39 |
A | ALA41 |
A | VAL45 |
A | SER104 |
A | THR105 |
A | THR107 |
A | ARG139 |
A | GLU140 |
A | HOH406 |
A | HOH424 |
A | HOH433 |
A | HOH439 |
A | HOH444 |
L | TRP84 |
L | CYS116 |
L | ARG122 |
L | HZZ302 |
site_id | AC3 |
Number of Residues | 22 |
Details | binding site for residue FMN B 301 |
Chain | Residue |
B | THR12 |
B | GLY13 |
B | ALA14 |
B | SER15 |
B | SER39 |
B | ALA41 |
B | VAL45 |
B | SER104 |
B | THR105 |
B | THR107 |
B | ARG139 |
B | HOH406 |
B | HOH407 |
B | HOH422 |
B | HOH429 |
B | HOH442 |
B | HOH443 |
B | HOH461 |
I | TRP84 |
I | CYS116 |
I | ARG122 |
I | HZZ302 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue ACT B 302 |
Chain | Residue |
B | LYS40 |
B | GLN81 |
B | ASN118 |
B | HOH406 |
site_id | AC5 |
Number of Residues | 12 |
Details | binding site for residue HZZ B 303 |
Chain | Residue |
B | ALA89 |
B | SER90 |
B | GLY91 |
B | ARG122 |
B | LYS129 |
B | HOH416 |
E | ARG139 |
E | GLU140 |
E | FMN301 |
J | TYR169 |
J | ARG185 |
J | HOH401 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue NA B 304 |
Chain | Residue |
B | ASN117 |
B | HOH425 |
B | HOH465 |
E | GLU121 |
E | HOH408 |
E | HOH423 |
site_id | AC7 |
Number of Residues | 11 |
Details | binding site for residue HZZ C 301 |
Chain | Residue |
A | TYR169 |
C | ALA89 |
C | SER90 |
C | GLY91 |
C | ARG122 |
C | LYS129 |
C | HOH415 |
C | HOH416 |
H | ARG139 |
H | GLU140 |
H | FMN301 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue ACT C 302 |
Chain | Residue |
C | GLU31 |
C | GLY70 |
site_id | AC9 |
Number of Residues | 22 |
Details | binding site for residue HJN C 303 |
Chain | Residue |
C | HOH409 |
C | HOH419 |
C | HOH429 |
C | HOH433 |
C | HOH435 |
C | HOH438 |
D | TRP84 |
D | ALA89 |
D | SER90 |
D | CYS116 |
D | PO4303 |
I | TYR169 |
C | THR12 |
C | GLY13 |
C | SER15 |
C | SER39 |
C | ALA41 |
C | VAL45 |
C | SER104 |
C | THR105 |
C | THR107 |
C | ARG139 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue NA C 304 |
Chain | Residue |
C | ASN117 |
H | GLU121 |
H | HOH452 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue NA D 301 |
Chain | Residue |
C | GLU121 |
C | HOH429 |
C | HOH433 |
C | HOH456 |
D | ASN117 |
D | HOH406 |
D | HOH460 |
site_id | AD3 |
Number of Residues | 22 |
Details | binding site for residue FMN D 302 |
Chain | Residue |
D | THR12 |
D | GLY13 |
D | ALA14 |
D | SER15 |
D | SER39 |
D | ALA41 |
D | LEU44 |
D | VAL45 |
D | SER104 |
D | THR105 |
D | THR107 |
D | ARG139 |
D | HOH410 |
D | HOH420 |
D | HOH432 |
D | HOH434 |
D | HOH443 |
D | HOH445 |
H | TRP84 |
H | CYS116 |
H | ARG122 |
H | HZZ302 |
site_id | AD4 |
Number of Residues | 10 |
Details | binding site for residue PO4 D 303 |
Chain | Residue |
C | ARG139 |
C | GLU140 |
C | HJN303 |
D | SER90 |
D | GLY91 |
D | ARG122 |
D | LYS129 |
D | HOH401 |
D | HOH439 |
I | TYR169 |
site_id | AD5 |
Number of Residues | 23 |
Details | binding site for residue FMN E 301 |
Chain | Residue |
B | TRP84 |
B | CYS116 |
B | ARG122 |
B | HZZ303 |
E | THR12 |
E | GLY13 |
E | ALA14 |
E | SER15 |
E | SER39 |
E | ALA41 |
E | LEU44 |
E | VAL45 |
E | SER104 |
E | THR105 |
E | THR107 |
E | ARG139 |
E | GLU140 |
E | HOH405 |
E | HOH408 |
E | HOH413 |
E | HOH423 |
E | HOH431 |
E | HOH451 |
site_id | AD6 |
Number of Residues | 10 |
Details | binding site for residue PO4 E 302 |
Chain | Residue |
C | TYR169 |
E | SER90 |
E | GLY91 |
E | ARG122 |
E | LYS129 |
E | HOH417 |
E | HOH425 |
I | ARG139 |
I | GLU140 |
I | HJN304 |
site_id | AD7 |
Number of Residues | 20 |
Details | binding site for residue FMN F 301 |
Chain | Residue |
F | THR12 |
F | GLY13 |
F | SER15 |
F | SER39 |
F | ALA41 |
F | LEU44 |
F | VAL45 |
F | SER104 |
F | THR105 |
F | THR107 |
F | ARG139 |
F | HOH407 |
F | HOH412 |
F | HOH422 |
F | HOH426 |
F | HOH434 |
K | TRP84 |
K | CYS116 |
K | ARG122 |
K | HZZ301 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue ACT F 302 |
Chain | Residue |
F | SER39 |
F | LYS40 |
F | GLN81 |
F | HOH411 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue NA F 303 |
Chain | Residue |
F | ASN117 |
F | HOH416 |
F | HOH447 |
G | GLU121 |
G | HOH405 |
G | HOH427 |
G | HOH433 |
site_id | AE1 |
Number of Residues | 10 |
Details | binding site for residue PO4 F 304 |
Chain | Residue |
D | TYR169 |
F | SER90 |
F | GLY91 |
F | ARG122 |
F | LYS129 |
F | HOH406 |
F | HOH437 |
G | ARG139 |
G | GLU140 |
G | HJN303 |
site_id | AE2 |
Number of Residues | 11 |
Details | binding site for residue HZZ G 301 |
Chain | Residue |
G | ALA89 |
G | SER90 |
G | GLY91 |
G | ARG122 |
G | LYS129 |
G | HOH403 |
G | HOH421 |
K | ARG139 |
K | GLU140 |
K | FMN302 |
L | TYR169 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue ACT G 302 |
Chain | Residue |
G | SER39 |
G | LYS40 |
G | GLN81 |
G | HOH402 |
site_id | AE4 |
Number of Residues | 25 |
Details | binding site for residue HJN G 303 |
Chain | Residue |
D | TYR169 |
F | TRP84 |
F | ALA89 |
F | SER90 |
F | CYS116 |
F | PO4304 |
F | HOH447 |
G | THR12 |
G | GLY13 |
G | SER15 |
G | SER39 |
G | ALA41 |
G | LEU44 |
G | VAL45 |
G | SER104 |
G | THR105 |
G | THR107 |
G | ARG139 |
G | GLU140 |
G | HOH413 |
G | HOH418 |
G | HOH427 |
G | HOH431 |
G | HOH433 |
G | HOH441 |
site_id | AE5 |
Number of Residues | 7 |
Details | binding site for residue NA G 304 |
Chain | Residue |
G | ASN117 |
G | HOH425 |
G | HOH446 |
K | GLU121 |
K | HOH407 |
K | HOH418 |
K | HOH454 |
site_id | AE6 |
Number of Residues | 21 |
Details | binding site for residue FMN H 301 |
Chain | Residue |
C | TRP84 |
C | CYS116 |
C | ARG122 |
C | HZZ301 |
H | THR12 |
H | GLY13 |
H | ALA14 |
H | SER15 |
H | SER39 |
H | ALA41 |
H | VAL45 |
H | SER104 |
H | THR105 |
H | THR107 |
H | ARG139 |
H | HOH410 |
H | HOH431 |
H | HOH433 |
H | HOH434 |
H | HOH444 |
H | HOH452 |
site_id | AE7 |
Number of Residues | 11 |
Details | binding site for residue HZZ H 302 |
Chain | Residue |
D | ARG139 |
D | GLU140 |
D | FMN302 |
G | TYR169 |
H | TRP84 |
H | SER90 |
H | GLY91 |
H | ARG122 |
H | LYS129 |
H | HOH421 |
H | HOH422 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue ACT H 303 |
Chain | Residue |
H | SER39 |
H | LYS40 |
H | GLN81 |
H | HOH401 |
site_id | AE9 |
Number of Residues | 7 |
Details | binding site for residue NA I 301 |
Chain | Residue |
B | GLU121 |
B | HOH429 |
B | HOH442 |
B | HOH453 |
B | HOH461 |
I | ASN117 |
I | HOH424 |
site_id | AF1 |
Number of Residues | 12 |
Details | binding site for residue HZZ I 302 |
Chain | Residue |
B | ARG139 |
B | GLU140 |
B | FMN301 |
F | TYR169 |
I | TRP84 |
I | MET85 |
I | SER90 |
I | GLY91 |
I | ARG122 |
I | LYS129 |
I | HOH408 |
I | HOH415 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue ACT I 303 |
Chain | Residue |
I | SER39 |
I | LYS40 |
I | GLN81 |
I | HOH417 |
site_id | AF3 |
Number of Residues | 23 |
Details | binding site for residue HJN I 304 |
Chain | Residue |
C | TYR169 |
E | TRP84 |
E | ALA89 |
E | SER90 |
E | CYS116 |
E | ARG122 |
E | PO4302 |
I | THR12 |
I | GLY13 |
I | SER15 |
I | SER39 |
I | ALA41 |
I | LEU44 |
I | VAL45 |
I | SER104 |
I | THR105 |
I | THR107 |
I | ARG139 |
I | HOH407 |
I | HOH409 |
I | HOH417 |
I | HOH421 |
I | HOH438 |
site_id | AF4 |
Number of Residues | 20 |
Details | binding site for residue FMN J 301 |
Chain | Residue |
A | TRP84 |
A | CYS116 |
A | ARG122 |
A | HZZ301 |
J | THR12 |
J | GLY13 |
J | SER15 |
J | SER39 |
J | ALA41 |
J | VAL45 |
J | SER104 |
J | THR105 |
J | THR107 |
J | ARG139 |
J | HOH404 |
J | HOH415 |
J | HOH421 |
J | HOH425 |
J | HOH443 |
J | HOH448 |
site_id | AF5 |
Number of Residues | 3 |
Details | binding site for residue ACT J 302 |
Chain | Residue |
J | SER39 |
J | LYS40 |
J | GLN81 |
site_id | AF6 |
Number of Residues | 12 |
Details | binding site for residue HZZ J 303 |
Chain | Residue |
J | TRP84 |
J | MET85 |
J | SER90 |
J | GLY91 |
J | ARG122 |
J | LYS129 |
J | HOH431 |
K | TYR169 |
K | HOH421 |
L | ARG139 |
L | GLU140 |
L | FMN301 |
site_id | AF7 |
Number of Residues | 7 |
Details | binding site for residue NA J 304 |
Chain | Residue |
J | ASN117 |
J | HOH403 |
J | HOH456 |
L | GLU121 |
L | HOH406 |
L | HOH415 |
L | HOH422 |
site_id | AF8 |
Number of Residues | 11 |
Details | binding site for residue HZZ K 301 |
Chain | Residue |
B | TYR169 |
F | ARG139 |
F | GLU140 |
F | FMN301 |
K | TRP84 |
K | SER90 |
K | GLY91 |
K | ARG122 |
K | LYS129 |
K | HOH415 |
K | HOH455 |
site_id | AF9 |
Number of Residues | 21 |
Details | binding site for residue FMN K 302 |
Chain | Residue |
G | TRP84 |
G | CYS116 |
G | ARG122 |
G | HZZ301 |
K | THR12 |
K | GLY13 |
K | SER15 |
K | SER39 |
K | ALA41 |
K | LEU44 |
K | VAL45 |
K | SER104 |
K | THR105 |
K | THR107 |
K | ARG139 |
K | HOH407 |
K | HOH408 |
K | HOH411 |
K | HOH433 |
K | HOH439 |
K | HOH454 |
site_id | AG1 |
Number of Residues | 20 |
Details | binding site for residue FMN L 301 |
Chain | Residue |
J | TRP84 |
J | CYS116 |
J | ARG122 |
J | HZZ303 |
L | THR12 |
L | GLY13 |
L | SER15 |
L | SER39 |
L | ALA41 |
L | VAL45 |
L | SER104 |
L | THR105 |
L | THR107 |
L | ARG139 |
L | HOH404 |
L | HOH415 |
L | HOH417 |
L | HOH422 |
L | HOH423 |
L | HOH445 |
site_id | AG2 |
Number of Residues | 11 |
Details | binding site for residue HZZ L 302 |
Chain | Residue |
A | ARG139 |
A | GLU140 |
A | FMN302 |
A | HOH417 |
H | TYR169 |
L | TRP84 |
L | SER90 |
L | GLY91 |
L | ARG122 |
L | LYS129 |
L | HOH444 |