6QA9

Isolated complex I class refinement from Ovine respiratory supercomplex I+III2

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
4L	0005743	cellular_component	mitochondrial inner membrane
4L	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
4L	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
4L	0022904	biological_process	respiratory electron transport chain
4L	0030964	cellular_component	NADH dehydrogenase complex
4L	0042773	biological_process	ATP synthesis coupled electron transport
4L	0045271	cellular_component	respiratory chain complex I
4L	1902600	biological_process	proton transmembrane transport
A3	0005743	cellular_component	mitochondrial inner membrane
A3	0045271	cellular_component	respiratory chain complex I
A5	0022904	biological_process	respiratory electron transport chain
A6	0005743	cellular_component	mitochondrial inner membrane
A6	0006979	biological_process	response to oxidative stress
A6	0022904	biological_process	respiratory electron transport chain
A6	0031966	cellular_component	mitochondrial membrane
A6	0032981	biological_process	mitochondrial respiratory chain complex I assembly
A6	0045271	cellular_component	respiratory chain complex I
A7	0005743	cellular_component	mitochondrial inner membrane
A7	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
A7	0022904	biological_process	respiratory electron transport chain
A7	0042773	biological_process	ATP synthesis coupled electron transport
A8	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
AA	0006633	biological_process	fatty acid biosynthetic process
AB	0006633	biological_process	fatty acid biosynthetic process
AJ	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
AK	0005743	cellular_component	mitochondrial inner membrane
AK	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
AK	0045271	cellular_component	respiratory chain complex I
AL	0016020	cellular_component	membrane
AL	0045271	cellular_component	respiratory chain complex I
B1	0005739	cellular_component	mitochondrion
B1	0005743	cellular_component	mitochondrial inner membrane
B1	0022904	biological_process	respiratory electron transport chain
B2	0005743	cellular_component	mitochondrial inner membrane
B2	0045271	cellular_component	respiratory chain complex I
B3	0005739	cellular_component	mitochondrion
B3	0022900	biological_process	electron transport chain
B4	0005739	cellular_component	mitochondrion
B4	0005743	cellular_component	mitochondrial inner membrane
B4	0022904	biological_process	respiratory electron transport chain
B6	0005743	cellular_component	mitochondrial inner membrane
B6	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
B6	0022904	biological_process	respiratory electron transport chain
B6	0042775	biological_process	mitochondrial ATP synthesis coupled electron transport
B7	0005739	cellular_component	mitochondrion
B8	0005739	cellular_component	mitochondrion
B8	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
B9	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
C1	0005739	cellular_component	mitochondrion
C1	0045271	cellular_component	respiratory chain complex I
C2	0005737	cellular_component	cytoplasm
C2	0005743	cellular_component	mitochondrial inner membrane
C2	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
C2	0022904	biological_process	respiratory electron transport chain
C2	0032981	biological_process	mitochondrial respiratory chain complex I assembly
C2	0045271	cellular_component	respiratory chain complex I
D1	0003954	molecular_function	NADH dehydrogenase activity
D1	0005743	cellular_component	mitochondrial inner membrane
D1	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D1	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D1	0009060	biological_process	aerobic respiration
D1	0016020	cellular_component	membrane
D1	0022904	biological_process	respiratory electron transport chain
D1	0031966	cellular_component	mitochondrial membrane
D1	0032981	biological_process	mitochondrial respiratory chain complex I assembly
D1	0045271	cellular_component	respiratory chain complex I
D1	1902600	biological_process	proton transmembrane transport
D2	0005743	cellular_component	mitochondrial inner membrane
D2	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D2	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D2	0022904	biological_process	respiratory electron transport chain
D2	0032981	biological_process	mitochondrial respiratory chain complex I assembly
D2	0045271	cellular_component	respiratory chain complex I
D2	1902600	biological_process	proton transmembrane transport
D3	0005743	cellular_component	mitochondrial inner membrane
D3	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D3	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D3	0022904	biological_process	respiratory electron transport chain
D3	0030964	cellular_component	NADH dehydrogenase complex
D3	0045271	cellular_component	respiratory chain complex I
D3	1902600	biological_process	proton transmembrane transport
D4	0003954	molecular_function	NADH dehydrogenase activity
D4	0005743	cellular_component	mitochondrial inner membrane
D4	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D4	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D4	0009060	biological_process	aerobic respiration
D4	0015990	biological_process	electron transport coupled proton transport
D4	0022904	biological_process	respiratory electron transport chain
D4	0032981	biological_process	mitochondrial respiratory chain complex I assembly
D4	0042773	biological_process	ATP synthesis coupled electron transport
D4	0045271	cellular_component	respiratory chain complex I
D4	0048039	molecular_function	ubiquinone binding
D5	0003954	molecular_function	NADH dehydrogenase activity
D5	0005743	cellular_component	mitochondrial inner membrane
D5	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D5	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D5	0015990	biological_process	electron transport coupled proton transport
D5	0022904	biological_process	respiratory electron transport chain
D5	0032981	biological_process	mitochondrial respiratory chain complex I assembly
D5	0042773	biological_process	ATP synthesis coupled electron transport
D5	0045271	cellular_component	respiratory chain complex I
D6	0005739	cellular_component	mitochondrion
D6	0005743	cellular_component	mitochondrial inner membrane
D6	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
D6	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D6	0022904	biological_process	respiratory electron transport chain
D6	0032981	biological_process	mitochondrial respiratory chain complex I assembly
D6	0045271	cellular_component	respiratory chain complex I
D6	1902600	biological_process	proton transmembrane transport
S1	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
S1	0016020	cellular_component	membrane
S1	0016491	molecular_function	oxidoreductase activity
S1	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
S1	0042773	biological_process	ATP synthesis coupled electron transport
S1	0051536	molecular_function	iron-sulfur cluster binding
S2	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
S2	0048038	molecular_function	quinone binding
S2	0051287	molecular_function	NAD binding
S3	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
S3	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
S4	0022900	biological_process	electron transport chain
S6	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
S7	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
S7	0048038	molecular_function	quinone binding
S7	0051536	molecular_function	iron-sulfur cluster binding
S7	0051539	molecular_function	4 iron, 4 sulfur cluster binding
S8	0016020	cellular_component	membrane
S8	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
S8	0051539	molecular_function	4 iron, 4 sulfur cluster binding
V1	0005743	cellular_component	mitochondrial inner membrane
V1	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
V1	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
V1	0010181	molecular_function	FMN binding
V1	0022904	biological_process	respiratory electron transport chain
V1	0045271	cellular_component	respiratory chain complex I
V1	0046872	molecular_function	metal ion binding
V1	0051287	molecular_function	NAD binding
V1	0051536	molecular_function	iron-sulfur cluster binding
V1	0051539	molecular_function	4 iron, 4 sulfur cluster binding
V1	1902600	biological_process	proton transmembrane transport
V2	0016491	molecular_function	oxidoreductase activity
V3	0005739	cellular_component	mitochondrion
V3	0045271	cellular_component	respiratory chain complex I

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	binding site for residue SF4 V1 500

Chain	Residue
V1	PRO203
V1	SER358
V1	CYS359
V1	GLN361
V1	CYS362
V1	CYS365
V1	THR403
V1	ILE404
V1	CYS405

---

site_id	AC2
Number of Residues	14
Details	binding site for residue FMN V1 501

Chain	Residue
V1	GLY67
V1	ARG68
V1	GLY69
V1	ALA71
V1	THR75
V1	LYS78
V1	ASN96
V1	ASP98
V1	TYR184
V1	GLY187
V1	GLU188
V1	ALA223
V1	ASN224
V1	THR227

---

site_id	AC3
Number of Residues	9
Details	binding site for residue FES V2 300

Chain	Residue
V2	CYS103
V2	THR105
V2	CYS108
V2	CYS144
V2	LEU145
V2	GLY146
V2	ALA147
V2	CYS148
V2	MET153

---

site_id	AC4
Number of Residues	9
Details	binding site for residue SF4 S1 801

Chain	Residue
S1	HIS101
S1	ASP104
S1	CYS105
S1	CYS108
S1	CYS114
S1	LEU116
S1	GLN117
S1	VAL205
S1	GLY206

---

site_id	AC5
Number of Residues	9
Details	binding site for residue SF4 S1 802

Chain	Residue
S1	CYS153
S1	ILE154
S1	GLN155
S1	CYS156
S1	THR157
S1	CYS159
S1	CYS203
S1	PRO204
S1	VAL205

---

site_id	AC6
Number of Residues	8
Details	binding site for residue FES S1 803

Chain	Residue
S1	CYS41
S1	TYR42
S1	GLY50
S1	ASN51
S1	CYS52
S1	ARG53
S1	CYS55
S1	CYS69

---

site_id	AC7
Number of Residues	9
Details	binding site for residue SF4 S7 300

Chain	Residue
S2	ARG105
S2	HIS190
S7	ALA53
S7	CYS54
S7	CYS55
S7	SER118
S7	CYS119
S7	CYS149
S7	PRO150

---

site_id	AC8
Number of Residues	10
Details	binding site for residue SF4 S8 201

Chain	Residue
S8	HIS65
S8	CYS87
S8	PRO88
S8	ILE92
S8	CYS116
S8	ILE117
S8	TYR118
S8	CYS119
S8	GLY120
S8	CYS122

---

site_id	AC9
Number of Residues	10
Details	binding site for residue SF4 S8 202

Chain	Residue
S8	CYS77
S8	ILE78
S8	ALA79
S8	CYS80
S8	LYS81
S8	CYS83
S8	ILE94
S8	TYR109
S8	CYS126
S8	ILE131

---

site_id	AD1
Number of Residues	5
Details	binding site for residue ZN S6 300

Chain	Residue
S6	CYS59
S6	HIS68
S6	VAL71
S6	CYS84
S6	CYS87

---

site_id	AD2
Number of Residues	13
Details	binding site for residue NDP A9 401

Chain	Residue
A9	ARG97
A9	GLU98
A9	ILE132
A9	HIS134
A9	LYS149
A9	ARG177
A9	THR27
A9	GLY28
A9	PHE29
A9	LEU30
A9	ARG50
A9	VAL95
A9	GLY96

---

site_id	AD3
Number of Residues	7
Details	binding site for residue ZMP AA 101

Chain	Residue
A6	LYS28
A6	VAL62
A6	MET65
A6	PHE66
A6	ALA70
AA	ASP43
AA	SER44

---

site_id	AD4
Number of Residues	7
Details	binding site for residue 3PE D1 501

Chain	Residue
AM	ILE140
AM	TRP141
D1	MET98
D1	ASN99
D3	LEU3
D6	LEU45
D6	SER50

---

site_id	AD5
Number of Residues	9
Details	binding site for residue CDL D5 901

Chain	Residue
B5	LEU22
D4	LEU354
D4	ALA357
D5	ASN23
D5	GLN116
D5	LYS119
D5	TYR120
D5	LEU123
D5	MET150

---

site_id	AD6
Number of Residues	12
Details	binding site for residue 3PE D5 902

Chain	Residue
B8	ASN87
B8	ARG88
B8	ASP90
D4	LEU405
D5	THR166
D5	LEU169
D5	GLN170
D5	TYR174
D5	HIS534
D5	THR537
D5	PRO538
D5	ASN541

---

site_id	AD7
Number of Residues	10
Details	binding site for residue 3PE D4 501

Chain	Residue
D2	TYR291
D4	LEU147
D4	TYR148
D4	PHE151
D4	TYR152
D4	ALA155
D5	SER567
D5	GLN570
S2	TYR14
S2	TYR20

---

site_id	AD8
Number of Residues	5
Details	binding site for residue PC1 D4 502

Chain	Residue
AK	TRP132
D2	ILE276
D4	TYR166
D4	SER191
D4	PHE194

---

site_id	AD9
Number of Residues	4
Details	binding site for residue 3PE A8 301

Chain	Residue
A8	TRP169
A8	THR170
A8	MET171
B1	LEU26

---

site_id	AE1
Number of Residues	7
Details	binding site for residue ZMP B9 201

Chain	Residue
AB	ASP43
AB	SER44
B9	HIS11
B9	GLN12
B9	HIS50
B9	LYS51
B9	ALA66

---

Functional Information from PROSITE/UniProt

site_id	PS00012
Number of Residues	16
Details	PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLDSLDQVEIIMAM

Chain	Residue	Details
AB	ASP39-MET54

---

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DIDAEKLMCpqEI

Chain	Residue	Details
AB	ASP64-ILE76

---

site_id	PS00198
Number of Residues	12
Details	4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACKlCEaVCP

Chain	Residue	Details
S8	CYS77-PRO88
S8	CYS116-PRO127

---

site_id	PS00535
Number of Residues	12
Details	COMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGtEKLiEyK

Chain	Residue	Details
S2	LEU83-LYS94

---

site_id	PS00542
Number of Residues	22
Details	COMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREiwDMFgvffanHpdlRrIL

Chain	Residue	Details
S3	GLU131-LEU152

---

site_id	PS00641
Number of Residues	18
Details	COMPLEX1_75K_1 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. PrfCYherlsvaGnCRmC

Chain	Residue	Details
S1	PRO38-CYS55

---

site_id	PS00642
Number of Residues	13
Details	COMPLEX1_75K_2 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. CPiCDqGGeCdLQ

Chain	Residue	Details
S1	CYS105-GLN117

---

site_id	PS00643
Number of Residues	11
Details	COMPLEX1_75K_3 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. RCIqCtRCIrF

Chain	Residue	Details
S1	ARG152-PHE162

---

site_id	PS00644
Number of Residues	16
Details	COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES

Chain	Residue	Details
V1	GLY180-SER195

---

site_id	PS00645
Number of Residues	12
Details	COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ESCGqCtPCReG

Chain	Residue	Details
V1	GLU357-GLY368

---

site_id	PS00667
Number of Residues	16
Details	COMPLEX1_ND1_1 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. GLLQpIaDAIKLFiKE

Chain	Residue	Details
D1	GLY44-GLU59

---

site_id	PS00668
Number of Residues	14
Details	COMPLEX1_ND1_2 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. PFDLTEGEseLVs.G

Chain	Residue	Details
D1	PRO197-GLY210

---

site_id	PS01099
Number of Residues	19
Details	COMPLEX1_24K Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. DklFTlieveCLGaCvnAP

Chain	Residue	Details
V2	ASP134-PRO152

---

site_id	PS01150
Number of Residues	17
Details	COMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GcDRIVPVDIYvPgCPP

Chain	Residue	Details
S7	GLY135-PRO151

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI7
Number of Residues	1142
Details	Transmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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