6Q9J
Crystal structure of reduced Aquifex aeolicus NADH-quinone oxidoreductase subunits NuoE G129S and NuoF bound to NADH
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003954 | molecular_function | NADH dehydrogenase activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0045271 | cellular_component | respiratory chain complex I |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0048038 | molecular_function | quinone binding |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
| B | 0010181 | molecular_function | FMN binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0048038 | molecular_function | quinone binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 1902600 | biological_process | proton transmembrane transport |
| C | 0003954 | molecular_function | NADH dehydrogenase activity |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0045271 | cellular_component | respiratory chain complex I |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0048038 | molecular_function | quinone binding |
| C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| D | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
| D | 0010181 | molecular_function | FMN binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0048038 | molecular_function | quinone binding |
| D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| D | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue FES A 201 |
| Chain | Residue |
| A | CYS86 |
| A | VAL90 |
| A | CYS91 |
| A | CYS127 |
| A | LEU128 |
| A | SER129 |
| A | ALA130 |
| A | CYS131 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 202 |
| Chain | Residue |
| A | ARG27 |
| A | HOH378 |
| A | LYS25 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 203 |
| Chain | Residue |
| A | ARG75 |
| A | HOH368 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | binding site for residue SF4 B 501 |
| Chain | Residue |
| B | PRO199 |
| B | THR346 |
| B | CYS347 |
| B | GLY348 |
| B | GLN349 |
| B | CYS350 |
| B | CYS353 |
| B | SER391 |
| B | ILE392 |
| B | CYS393 |
| B | LEU395 |
| B | GLY396 |
| site_id | AC5 |
| Number of Residues | 22 |
| Details | binding site for residue FMN B 502 |
| Chain | Residue |
| B | GLY65 |
| B | ARG66 |
| B | GLY67 |
| B | LYS76 |
| B | ASN92 |
| B | ASP94 |
| B | GLU95 |
| B | TYR180 |
| B | GLY183 |
| B | GLU184 |
| B | GLU185 |
| B | VAL218 |
| B | ASN219 |
| B | ASN220 |
| B | THR223 |
| B | GLY394 |
| B | NAI503 |
| B | HOH893 |
| B | HOH901 |
| B | HOH921 |
| B | HOH934 |
| B | HOH967 |
| site_id | AC6 |
| Number of Residues | 26 |
| Details | binding site for residue NAI B 503 |
| Chain | Residue |
| B | GLY67 |
| B | GLY68 |
| B | ALA69 |
| B | PHE71 |
| B | LYS76 |
| B | GLU95 |
| B | SER96 |
| B | GLU97 |
| B | TYR180 |
| B | GLU185 |
| B | TYR205 |
| B | FMN502 |
| B | HOH822 |
| B | HOH825 |
| B | HOH829 |
| B | HOH841 |
| B | HOH884 |
| B | HOH892 |
| B | HOH899 |
| B | HOH928 |
| B | HOH963 |
| B | HOH973 |
| B | HOH978 |
| B | HOH988 |
| D | TRP235 |
| D | ARG239 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 504 |
| Chain | Residue |
| B | TYR34 |
| B | ASP37 |
| B | GLU116 |
| B | HOH814 |
| B | HOH870 |
| B | HOH949 |
| B | HOH1025 |
| B | HOH1042 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 505 |
| Chain | Residue |
| B | ASP298 |
| B | GLY315 |
| B | PHE316 |
| B | ARG401 |
| B | HOH811 |
| B | HOH1011 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue NA B 506 |
| Chain | Residue |
| B | GLU33 |
| B | HOH1113 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue NA B 507 |
| Chain | Residue |
| B | GLU108 |
| B | ARG109 |
| B | HOH916 |
| B | HOH1024 |
| site_id | AD2 |
| Number of Residues | 8 |
| Details | binding site for residue FES C 201 |
| Chain | Residue |
| C | ALA130 |
| C | CYS131 |
| C | CYS86 |
| C | VAL90 |
| C | CYS91 |
| C | CYS127 |
| C | LEU128 |
| C | SER129 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 202 |
| Chain | Residue |
| C | HIS35 |
| C | ASP141 |
| C | HOH321 |
| D | ARG175 |
| D | HOH616 |
| D | HOH849 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 203 |
| Chain | Residue |
| C | ARG75 |
| C | GLU76 |
| C | HOH331 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 204 |
| Chain | Residue |
| C | LYS25 |
| C | ARG27 |
| C | HOH375 |
| site_id | AD6 |
| Number of Residues | 11 |
| Details | binding site for residue SF4 D 501 |
| Chain | Residue |
| D | PRO199 |
| D | THR346 |
| D | CYS347 |
| D | GLY348 |
| D | GLN349 |
| D | CYS350 |
| D | CYS353 |
| D | SER391 |
| D | ILE392 |
| D | CYS393 |
| D | GLY396 |
| site_id | AD7 |
| Number of Residues | 22 |
| Details | binding site for residue FMN D 502 |
| Chain | Residue |
| D | GLY65 |
| D | ARG66 |
| D | GLY67 |
| D | LYS76 |
| D | ASN92 |
| D | ASP94 |
| D | GLU95 |
| D | TYR180 |
| D | GLY183 |
| D | GLU184 |
| D | GLU185 |
| D | VAL218 |
| D | ASN219 |
| D | ASN220 |
| D | THR223 |
| D | GLY394 |
| D | NAI503 |
| D | HOH713 |
| D | HOH731 |
| D | HOH736 |
| D | HOH737 |
| D | HOH773 |
| site_id | AD8 |
| Number of Residues | 26 |
| Details | binding site for residue NAI D 503 |
| Chain | Residue |
| D | GLY67 |
| D | GLY68 |
| D | ALA69 |
| D | PHE71 |
| D | LYS76 |
| D | PHE79 |
| D | GLU95 |
| D | SER96 |
| D | GLU97 |
| D | TYR180 |
| D | GLU185 |
| D | TYR205 |
| D | PRO206 |
| D | FMN502 |
| D | HOH627 |
| D | HOH633 |
| D | HOH640 |
| D | HOH662 |
| D | HOH691 |
| D | HOH692 |
| D | HOH707 |
| D | HOH719 |
| D | HOH749 |
| D | HOH752 |
| D | HOH785 |
| D | HOH861 |
| site_id | AD9 |
| Number of Residues | 9 |
| Details | binding site for residue GOL D 504 |
| Chain | Residue |
| D | TYR34 |
| D | ASP37 |
| D | GLY39 |
| D | GLU116 |
| D | HOH658 |
| D | HOH664 |
| D | HOH720 |
| D | HOH727 |
| D | HOH797 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 505 |
| Chain | Residue |
| B | GLY159 |
| B | LYS160 |
| D | LYS25 |
| D | ARG27 |
| D | HOH769 |
| site_id | AE2 |
| Number of Residues | 8 |
| Details | binding site for residue GOL D 506 |
| Chain | Residue |
| D | ASP298 |
| D | GLY315 |
| D | PHE316 |
| D | ARG401 |
| D | HOH618 |
| D | HOH642 |
| D | HOH666 |
| D | HOH669 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 D 507 |
| Chain | Residue |
| B | LYS25 |
| B | ARG27 |
| D | LYS160 |
| D | GLU170 |
| D | HOH808 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue NA D 508 |
| Chain | Residue |
| B | ARG354 |
| D | GLU359 |
| D | ASN362 |
| D | HOH863 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue NA D 509 |
| Chain | Residue |
| D | GLU108 |
| D | ARG109 |
| D | HOH638 |
| D | HOH764 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 24 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGFGGTGTVIvLteeddive..........AALK |
| Chain | Residue | Details |
| B | LEU314-LYS337 |
| site_id | PS00644 |
| Number of Residues | 16 |
| Details | COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES |
| Chain | Residue | Details |
| B | GLY176-SER191 |
| site_id | PS00645 |
| Number of Residues | 12 |
| Details | COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ETCGqCtPCRvG |
| Chain | Residue | Details |
| B | GLU345-GLY356 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| B | GLY65 | |
| B | GLY176 | |
| D | GLY65 | |
| D | GLY176 | |
| C | CYS86 | |
| C | CYS91 | |
| C | CYS127 | |
| C | CYS131 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000255 |
| Chain | Residue | Details |
| B | CYS347 | |
| B | CYS350 | |
| B | CYS353 | |
| B | CYS393 | |
| D | CYS347 | |
| D | CYS350 | |
| D | CYS353 | |
| D | CYS393 |
