Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6Q7L

Spiral structure of E. coli RavA in the RavA-LdcI cage-like complex

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0006520	biological_process	amino acid metabolic process
A	0006554	biological_process	lysine catabolic process
A	0008923	molecular_function	lysine decarboxylase activity
A	0016831	molecular_function	carboxy-lyase activity
A	0042802	molecular_function	identical protein binding
A	0097216	molecular_function	guanosine tetraphosphate binding
B	0003824	molecular_function	catalytic activity
B	0005515	molecular_function	protein binding
B	0005737	cellular_component	cytoplasm
B	0006520	biological_process	amino acid metabolic process
B	0006554	biological_process	lysine catabolic process
B	0008923	molecular_function	lysine decarboxylase activity
B	0016831	molecular_function	carboxy-lyase activity
B	0042802	molecular_function	identical protein binding
B	0097216	molecular_function	guanosine tetraphosphate binding
C	0003824	molecular_function	catalytic activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0006520	biological_process	amino acid metabolic process
C	0006554	biological_process	lysine catabolic process
C	0008923	molecular_function	lysine decarboxylase activity
C	0016831	molecular_function	carboxy-lyase activity
C	0042802	molecular_function	identical protein binding
C	0097216	molecular_function	guanosine tetraphosphate binding
D	0003824	molecular_function	catalytic activity
D	0005515	molecular_function	protein binding
D	0005737	cellular_component	cytoplasm
D	0006520	biological_process	amino acid metabolic process
D	0006554	biological_process	lysine catabolic process
D	0008923	molecular_function	lysine decarboxylase activity
D	0016831	molecular_function	carboxy-lyase activity
D	0042802	molecular_function	identical protein binding
D	0097216	molecular_function	guanosine tetraphosphate binding
E	0003824	molecular_function	catalytic activity
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0006520	biological_process	amino acid metabolic process
E	0006554	biological_process	lysine catabolic process
E	0008923	molecular_function	lysine decarboxylase activity
E	0016831	molecular_function	carboxy-lyase activity
E	0042802	molecular_function	identical protein binding
E	0097216	molecular_function	guanosine tetraphosphate binding
F	0003824	molecular_function	catalytic activity
F	0005515	molecular_function	protein binding
F	0005737	cellular_component	cytoplasm
F	0006520	biological_process	amino acid metabolic process
F	0006554	biological_process	lysine catabolic process
F	0008923	molecular_function	lysine decarboxylase activity
F	0016831	molecular_function	carboxy-lyase activity
F	0042802	molecular_function	identical protein binding
F	0097216	molecular_function	guanosine tetraphosphate binding
G	0003824	molecular_function	catalytic activity
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0006520	biological_process	amino acid metabolic process
G	0006554	biological_process	lysine catabolic process
G	0008923	molecular_function	lysine decarboxylase activity
G	0016831	molecular_function	carboxy-lyase activity
G	0042802	molecular_function	identical protein binding
G	0097216	molecular_function	guanosine tetraphosphate binding
H	0003824	molecular_function	catalytic activity
H	0005515	molecular_function	protein binding
H	0005737	cellular_component	cytoplasm
H	0006520	biological_process	amino acid metabolic process
H	0006554	biological_process	lysine catabolic process
H	0008923	molecular_function	lysine decarboxylase activity
H	0016831	molecular_function	carboxy-lyase activity
H	0042802	molecular_function	identical protein binding
H	0097216	molecular_function	guanosine tetraphosphate binding
I	0003824	molecular_function	catalytic activity
I	0005515	molecular_function	protein binding
I	0005737	cellular_component	cytoplasm
I	0006520	biological_process	amino acid metabolic process
I	0006554	biological_process	lysine catabolic process
I	0008923	molecular_function	lysine decarboxylase activity
I	0016831	molecular_function	carboxy-lyase activity
I	0042802	molecular_function	identical protein binding
I	0097216	molecular_function	guanosine tetraphosphate binding
J	0003824	molecular_function	catalytic activity
J	0005515	molecular_function	protein binding
J	0005737	cellular_component	cytoplasm
J	0006520	biological_process	amino acid metabolic process
J	0006554	biological_process	lysine catabolic process
J	0008923	molecular_function	lysine decarboxylase activity
J	0016831	molecular_function	carboxy-lyase activity
J	0042802	molecular_function	identical protein binding
J	0097216	molecular_function	guanosine tetraphosphate binding
K	0003824	molecular_function	catalytic activity
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0006520	biological_process	amino acid metabolic process
K	0006554	biological_process	lysine catabolic process
K	0008923	molecular_function	lysine decarboxylase activity
K	0016831	molecular_function	carboxy-lyase activity
K	0042802	molecular_function	identical protein binding
K	0097216	molecular_function	guanosine tetraphosphate binding
L	0003824	molecular_function	catalytic activity
L	0005515	molecular_function	protein binding
L	0005737	cellular_component	cytoplasm
L	0006520	biological_process	amino acid metabolic process
L	0006554	biological_process	lysine catabolic process
L	0008923	molecular_function	lysine decarboxylase activity
L	0016831	molecular_function	carboxy-lyase activity
L	0042802	molecular_function	identical protein binding
L	0097216	molecular_function	guanosine tetraphosphate binding
M	0003824	molecular_function	catalytic activity
M	0005515	molecular_function	protein binding
M	0005737	cellular_component	cytoplasm
M	0006520	biological_process	amino acid metabolic process
M	0006554	biological_process	lysine catabolic process
M	0008923	molecular_function	lysine decarboxylase activity
M	0016831	molecular_function	carboxy-lyase activity
M	0042802	molecular_function	identical protein binding
M	0097216	molecular_function	guanosine tetraphosphate binding
N	0003824	molecular_function	catalytic activity
N	0005515	molecular_function	protein binding
N	0005737	cellular_component	cytoplasm
N	0006520	biological_process	amino acid metabolic process
N	0006554	biological_process	lysine catabolic process
N	0008923	molecular_function	lysine decarboxylase activity
N	0016831	molecular_function	carboxy-lyase activity
N	0042802	molecular_function	identical protein binding
N	0097216	molecular_function	guanosine tetraphosphate binding
O	0003824	molecular_function	catalytic activity
O	0005515	molecular_function	protein binding
O	0005737	cellular_component	cytoplasm
O	0006520	biological_process	amino acid metabolic process
O	0006554	biological_process	lysine catabolic process
O	0008923	molecular_function	lysine decarboxylase activity
O	0016831	molecular_function	carboxy-lyase activity
O	0042802	molecular_function	identical protein binding
O	0097216	molecular_function	guanosine tetraphosphate binding
P	0003824	molecular_function	catalytic activity
P	0005515	molecular_function	protein binding
P	0005737	cellular_component	cytoplasm
P	0006520	biological_process	amino acid metabolic process
P	0006554	biological_process	lysine catabolic process
P	0008923	molecular_function	lysine decarboxylase activity
P	0016831	molecular_function	carboxy-lyase activity
P	0042802	molecular_function	identical protein binding
P	0097216	molecular_function	guanosine tetraphosphate binding
Q	0003824	molecular_function	catalytic activity
Q	0005515	molecular_function	protein binding
Q	0005737	cellular_component	cytoplasm
Q	0006520	biological_process	amino acid metabolic process
Q	0006554	biological_process	lysine catabolic process
Q	0008923	molecular_function	lysine decarboxylase activity
Q	0016831	molecular_function	carboxy-lyase activity
Q	0042802	molecular_function	identical protein binding
Q	0097216	molecular_function	guanosine tetraphosphate binding
R	0003824	molecular_function	catalytic activity
R	0005515	molecular_function	protein binding
R	0005737	cellular_component	cytoplasm
R	0006520	biological_process	amino acid metabolic process
R	0006554	biological_process	lysine catabolic process
R	0008923	molecular_function	lysine decarboxylase activity
R	0016831	molecular_function	carboxy-lyase activity
R	0042802	molecular_function	identical protein binding
R	0097216	molecular_function	guanosine tetraphosphate binding
S	0003824	molecular_function	catalytic activity
S	0005515	molecular_function	protein binding
S	0005737	cellular_component	cytoplasm
S	0006520	biological_process	amino acid metabolic process
S	0006554	biological_process	lysine catabolic process
S	0008923	molecular_function	lysine decarboxylase activity
S	0016831	molecular_function	carboxy-lyase activity
S	0042802	molecular_function	identical protein binding
S	0097216	molecular_function	guanosine tetraphosphate binding
T	0003824	molecular_function	catalytic activity
T	0005515	molecular_function	protein binding
T	0005737	cellular_component	cytoplasm
T	0006520	biological_process	amino acid metabolic process
T	0006554	biological_process	lysine catabolic process
T	0008923	molecular_function	lysine decarboxylase activity
T	0016831	molecular_function	carboxy-lyase activity
T	0042802	molecular_function	identical protein binding
T	0097216	molecular_function	guanosine tetraphosphate binding
U	0005515	molecular_function	protein binding
U	0005524	molecular_function	ATP binding
U	0005737	cellular_component	cytoplasm
U	0005829	cellular_component	cytosol
U	0016787	molecular_function	hydrolase activity
U	0016887	molecular_function	ATP hydrolysis activity
U	0042802	molecular_function	identical protein binding
V	0005515	molecular_function	protein binding
V	0005524	molecular_function	ATP binding
V	0005737	cellular_component	cytoplasm
V	0005829	cellular_component	cytosol
V	0016787	molecular_function	hydrolase activity
V	0016887	molecular_function	ATP hydrolysis activity
V	0042802	molecular_function	identical protein binding
W	0005515	molecular_function	protein binding
W	0005524	molecular_function	ATP binding
W	0005737	cellular_component	cytoplasm
W	0005829	cellular_component	cytosol
W	0016787	molecular_function	hydrolase activity
W	0016887	molecular_function	ATP hydrolysis activity
W	0042802	molecular_function	identical protein binding
X	0005515	molecular_function	protein binding
X	0005524	molecular_function	ATP binding
X	0005737	cellular_component	cytoplasm
X	0005829	cellular_component	cytosol
X	0016787	molecular_function	hydrolase activity
X	0016887	molecular_function	ATP hydrolysis activity
X	0042802	molecular_function	identical protein binding
Y	0005515	molecular_function	protein binding
Y	0005524	molecular_function	ATP binding
Y	0005737	cellular_component	cytoplasm
Y	0005829	cellular_component	cytosol
Y	0016787	molecular_function	hydrolase activity
Y	0016887	molecular_function	ATP hydrolysis activity
Y	0042802	molecular_function	identical protein binding
Z	0005515	molecular_function	protein binding
Z	0005524	molecular_function	ATP binding
Z	0005737	cellular_component	cytoplasm
Z	0005829	cellular_component	cytosol
Z	0016787	molecular_function	hydrolase activity
Z	0016887	molecular_function	ATP hydrolysis activity
Z	0042802	molecular_function	identical protein binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	binding site for residue PLP A 801

Chain	Residue
A	GLY219
F	SER400
A	THR220
A	SER221
A	HIS245
A	ASP330
A	TRP333
A	HIS366
A	LYS367
F	THR398

site_id	AC2
Number of Residues	11
Details	binding site for residue PLP B 801

Chain	Residue
B	GLY219
B	THR220
B	SER221
B	HIS245
B	ASP330
B	ALA332
B	TRP333
B	HIS366
B	LYS367
I	THR398
I	SER400

site_id	AC3
Number of Residues	11
Details	binding site for residue PLP C 801

Chain	Residue
C	GLY219
C	THR220
C	SER221
C	HIS245
C	ASP330
C	ALA332
C	TRP333
C	HIS366
C	LYS367
G	THR398
G	SER400

site_id	AC4
Number of Residues	14
Details	binding site for residue ADP V 800

Chain	Residue
U	ARG170
U	ARG251
U	LYS254
V	LEU22
V	ARG25
V	PRO48
V	GLY49
V	ILE50
V	ALA51
V	LYS52
V	SER53
V	LEU54
V	MET189
V	GLU196

site_id	AC5
Number of Residues	14
Details	binding site for residue ADP W 800

Chain	Residue
V	ARG170
V	ASP250
V	ARG251
V	LYS254
W	LEU22
W	ARG25
W	GLY49
W	ILE50
W	ALA51
W	LYS52
W	SER53
W	LEU54
W	MET189
W	GLU196

site_id	AC6
Number of Residues	13
Details	binding site for residue ADP X 800

Chain	Residue
W	ARG170
W	ASP250
W	ARG251
W	LYS254
X	LEU22
X	ARG25
X	GLY49
X	ILE50
X	ALA51
X	LYS52
X	SER53
X	LEU54
X	MET189

site_id	AC7
Number of Residues	14
Details	binding site for residue ADP Y 800

Chain	Residue
X	ARG170
X	ASP250
X	ARG251
X	LYS254
Y	LEU22
Y	ARG25
Y	PRO48
Y	GLY49
Y	ILE50
Y	ALA51
Y	LYS52
Y	SER53
Y	LEU54
Y	MET189

site_id	AC8
Number of Residues	14
Details	binding site for residue ADP Z 800

Chain	Residue
Z	MET189
Z	GLU196
Y	ARG170
Y	ASP250
Y	ARG251
Z	LEU22
Z	ARG25
Z	PRO48
Z	GLY49
Z	ILE50
Z	ALA51
Z	LYS52
Z	SER53
Z	LEU54

site_id	AC9
Number of Residues	16
Details	binding site for Di-peptide PLP D 801 and LYS D 367

Chain	Residue
D	GLY219
D	THR220
D	SER221
D	HIS245
D	ASP330
D	ALA332
D	TRP333
D	SER364
D	THR365
D	HIS366
D	LEU368
D	LEU369
J	GLY151
J	THR398
J	THR399
J	SER400

site_id	AD1
Number of Residues	16
Details	binding site for Di-peptide PLP E 801 and LYS E 367

Chain	Residue
E	GLY219
E	THR220
E	SER221
E	HIS245
E	ASP330
E	ALA332
E	TRP333
E	SER364
E	THR365
E	HIS366
E	LEU368
E	LEU369
H	GLY151
H	THR398
H	THR399
H	SER400

site_id	AD2
Number of Residues	14
Details	binding site for Di-peptide PLP F 801 and LYS F 367

Chain	Residue
A	GLY151
A	THR398
A	SER400
F	GLY219
F	THR220
F	SER221
F	HIS245
F	ASP330
F	TRP333
F	SER364
F	THR365
F	HIS366
F	LEU368
F	LEU369

site_id	AD3
Number of Residues	16
Details	binding site for Di-peptide PLP G 801 and LYS G 367

Chain	Residue
C	GLY151
C	THR398
C	THR399
C	SER400
G	GLY219
G	THR220
G	SER221
G	HIS245
G	ASP330
G	ALA332
G	TRP333
G	SER364
G	THR365
G	HIS366
G	LEU368
G	LEU369

site_id	AD4
Number of Residues	15
Details	binding site for Di-peptide PLP H 801 and LYS H 367

Chain	Residue
E	GLY151
E	THR398
E	THR399
E	SER400
H	GLY219
H	THR220
H	SER221
H	HIS245
H	ASP330
H	ALA332
H	TRP333
H	THR365
H	HIS366
H	LEU368
H	LEU369

site_id	AD5
Number of Residues	15
Details	binding site for Di-peptide PLP I 801 and LYS I 367

Chain	Residue
B	GLY151
B	THR398
B	SER400
I	GLY219
I	THR220
I	SER221
I	HIS245
I	ASP330
I	ALA332
I	TRP333
I	SER364
I	THR365
I	HIS366
I	LEU368
I	LEU369

site_id	AD6
Number of Residues	14
Details	binding site for Di-peptide PLP J 801 and LYS J 367

Chain	Residue
D	THR398
D	THR399
D	SER400
J	THR220
J	SER221
J	HIS245
J	ASP330
J	ALA332
J	TRP333
J	SER364
J	THR365
J	HIS366
J	LEU368
J	LEU369

site_id	AD7
Number of Residues	14
Details	binding site for Di-peptide PLP K 801 and LYS K 367

Chain	Residue
K	GLY219
K	THR220
K	SER221
K	HIS245
K	ASP330
K	TRP333
K	SER364
K	THR365
K	HIS366
K	LEU368
K	LEU369
R	GLY151
R	THR398
R	SER400

site_id	AD8
Number of Residues	16
Details	binding site for Di-peptide PLP L 801 and LYS L 367

Chain	Residue
L	GLY219
L	THR220
L	SER221
L	HIS245
L	ASP330
L	ALA332
L	TRP333
L	SER364
L	THR365
L	HIS366
L	LEU368
L	LEU369
Q	GLY151
Q	THR398
Q	THR399
Q	SER400

site_id	AD9
Number of Residues	15
Details	binding site for Di-peptide PLP M 801 and LYS M 367

Chain	Residue
M	GLY219
M	THR220
M	SER221
M	HIS245
M	ASP330
M	ALA332
M	TRP333
M	THR365
M	HIS366
M	LEU368
M	LEU369
P	GLY151
P	THR398
P	THR399
P	SER400

site_id	AE1
Number of Residues	15
Details	binding site for Di-peptide PLP N 801 and LYS N 367

Chain	Residue
N	GLY219
N	THR220
N	SER221
N	HIS245
N	ASP330
N	ALA332
N	TRP333
N	SER364
N	THR365
N	HIS366
N	LEU368
N	LEU369
T	GLY151
T	THR398
T	SER400

site_id	AE2
Number of Residues	14
Details	binding site for Di-peptide PLP O 801 and LYS O 367

Chain	Residue
O	THR220
O	SER221
O	HIS245
O	ASP330
O	ALA332
O	TRP333
O	SER364
O	THR365
O	HIS366
O	LEU368
O	LEU369
S	THR398
S	THR399
S	SER400

site_id	AE3
Number of Residues	16
Details	binding site for Di-peptide PLP P 801 and LYS P 367

Chain	Residue
M	GLY151
M	THR398
M	THR399
M	SER400
P	GLY219
P	THR220
P	SER221
P	HIS245
P	ASP330
P	ALA332
P	TRP333
P	SER364
P	THR365
P	HIS366
P	LEU368
P	LEU369

site_id	AE4
Number of Residues	15
Details	binding site for Di-peptide PLP Q 801 and LYS Q 367

Chain	Residue
L	GLY151
L	THR398
L	SER400
Q	GLY219
Q	THR220
Q	SER221
Q	HIS245
Q	ASP330
Q	ALA332
Q	TRP333
Q	SER364
Q	THR365
Q	HIS366
Q	LEU368
Q	LEU369

site_id	AE5
Number of Residues	15
Details	binding site for Di-peptide PLP R 801 and LYS R 367

Chain	Residue
K	GLY151
K	THR398
K	THR399
K	SER400
R	GLY219
R	THR220
R	SER221
R	HIS245
R	ASP330
R	TRP333
R	SER364
R	THR365
R	HIS366
R	LEU368
R	LEU369

site_id	AE6
Number of Residues	16
Details	binding site for Di-peptide PLP S 801 and LYS S 367

Chain	Residue
O	GLY151
O	THR398
O	THR399
O	SER400
S	GLY219
S	THR220
S	SER221
S	HIS245
S	ASP330
S	ALA332
S	TRP333
S	SER364
S	THR365
S	HIS366
S	LEU368
S	LEU369

site_id	AE7
Number of Residues	15
Details	binding site for Di-peptide PLP T 801 and LYS T 367

Chain	Residue
N	GLY151
N	THR398
N	SER400
T	GLY219
T	THR220
T	SER221
T	HIS245
T	ASP330
T	ALA332
T	TRP333
T	SER364
T	THR365
T	HIS366
T	LEU368
T	LEU369

Functional Information from PROSITE/UniProt

site_id	PS00703
Number of Residues	15
Details	OKR_DC_1 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. TqStHKllAAfSQAS

Chain	Residue	Details
A	THR362-SER376

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	20
Details	MOD_RES: N6-(pyridoxal phosphate)lysine

Chain	Residue	Details
A	LYS367
J	LYS367
K	LYS367
L	LYS367
M	LYS367
N	LYS367
O	LYS367
P	LYS367
Q	LYS367
R	LYS367
S	LYS367
B	LYS367
T	LYS367
C	LYS367
D	LYS367
E	LYS367
F	LYS367
G	LYS367
H	LYS367
I	LYS367

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)