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6Q01

TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 2

Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG A 101
ChainResidue
AASP32
AK104
AHOH223
AHOH258
AHOH322
BASP32
BHOH118

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 102
ChainResidue
AHOH282
AHOH309
AHOH349
BGLU16
AGLU16
AHOH254

site_idAC3
Number of Residues10
Detailsbinding site for residue EDO A 103
ChainResidue
AASP58
AHOH230
AHOH265
AHOH331
AHOH336
AHOH387
CALA24
DARG26
DVAL30
DALA40

site_idAC4
Number of Residues8
Detailsbinding site for residue K A 104
ChainResidue
AASP32
AMG101
AHOH223
AHOH258
AHOH322
AHOH342
BASP32
BHOH118

site_idAC5
Number of Residues11
Detailsbinding site for residue BEZ C 101
ChainResidue
CALA24
CARG25
CLEU28
CHOH202
CHOH217
CHOH252
CHOH281
CHOH288
DARG26
DGLN44
DHOH273

site_idAC6
Number of Residues5
Detailsbinding site for residue K C 102
ChainResidue
AGLY47
CALA36
CTYR61
CHOH211
CHOH267

site_idAC7
Number of Residues6
Detailsbinding site for residue K D 101
ChainResidue
AHOH287
DALA36
DSER37
DTYR61
DHOH204
DHOH240

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
AARG54
AARG72
BARG54
BARG72

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for function
ChainResidueDetails
AHIS68
BHIS68

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
ASER65
BSER65

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
AGLY76
BGLY76

site_idSWS_FT_FI5
Number of Residues14
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
ALYS6
BLYS27
BLYS29
BLYS33
BLYS48
BLYS63
ALYS11
ALYS27
ALYS29
ALYS33
ALYS48
ALYS63
BLYS6
BLYS11

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
AGLY76
BGLY76

223166

PDB entries from 2024-07-31

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