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6PZS

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with JR005

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AP7J804
AHOH905

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
ALEU634
AASP610
AASP612
AHIS614
ASER633

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH984
AHOH1080

site_idAC4
Number of Residues16
Detailsbinding site for residue P7J A 804
ChainResidue
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ALEU712
AGLY743
ATYR745
AZN801
ANO3807
AHOH905
AHOH961
AHOH1081
AHOH1158

site_idAC5
Number of Residues2
Detailsbinding site for residue CL A 805
ChainResidue
ATRP459
ATRP459

site_idAC6
Number of Residues9
Detailsbinding site for residue NO3 A 806
ChainResidue
ATHR600
AARG601
AALA641
APHE642
APHE643
AHOH955
AHOH969
AHOH1078
AHOH1158

site_idAC7
Number of Residues8
Detailsbinding site for residue NO3 A 807
ChainResidue
AHIS463
ASER531
AILE532
APHE533
APHE583
AP7J804
AHOH985
AHOH1084

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PDB entries from 2024-07-10

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