6PZQ

Structure of the human respiratory syncytial virus M2-1 protein in complex with a short positive-sense gene-end RNA

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0005198	molecular_function	structural molecule activity
A	0005515	molecular_function	protein binding
A	0006351	biological_process	DNA-templated transcription
A	0008270	molecular_function	zinc ion binding
A	0019083	biological_process	viral transcription
A	0030430	cellular_component	host cell cytoplasm
A	0031564	biological_process	transcription antitermination
A	0042025	cellular_component	host cell nucleus
A	0044423	cellular_component	virion component
A	0046782	biological_process	regulation of viral transcription
A	0046872	molecular_function	metal ion binding
A	0085033	biological_process	symbiont-mediated activation of host NF-kappaB cascade
B	0003723	molecular_function	RNA binding
B	0005198	molecular_function	structural molecule activity
B	0005515	molecular_function	protein binding
B	0006351	biological_process	DNA-templated transcription
B	0008270	molecular_function	zinc ion binding
B	0019083	biological_process	viral transcription
B	0030430	cellular_component	host cell cytoplasm
B	0031564	biological_process	transcription antitermination
B	0042025	cellular_component	host cell nucleus
B	0044423	cellular_component	virion component
B	0046782	biological_process	regulation of viral transcription
B	0046872	molecular_function	metal ion binding
B	0085033	biological_process	symbiont-mediated activation of host NF-kappaB cascade
C	0003723	molecular_function	RNA binding
C	0005198	molecular_function	structural molecule activity
C	0005515	molecular_function	protein binding
C	0006351	biological_process	DNA-templated transcription
C	0008270	molecular_function	zinc ion binding
C	0019083	biological_process	viral transcription
C	0030430	cellular_component	host cell cytoplasm
C	0031564	biological_process	transcription antitermination
C	0042025	cellular_component	host cell nucleus
C	0044423	cellular_component	virion component
C	0046782	biological_process	regulation of viral transcription
C	0046872	molecular_function	metal ion binding
C	0085033	biological_process	symbiont-mediated activation of host NF-kappaB cascade
D	0003723	molecular_function	RNA binding
D	0005198	molecular_function	structural molecule activity
D	0005515	molecular_function	protein binding
D	0006351	biological_process	DNA-templated transcription
D	0008270	molecular_function	zinc ion binding
D	0019083	biological_process	viral transcription
D	0030430	cellular_component	host cell cytoplasm
D	0031564	biological_process	transcription antitermination
D	0042025	cellular_component	host cell nucleus
D	0044423	cellular_component	virion component
D	0046782	biological_process	regulation of viral transcription
D	0046872	molecular_function	metal ion binding
D	0085033	biological_process	symbiont-mediated activation of host NF-kappaB cascade

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 201

Chain	Residue
A	CYS7
A	CYS15
A	CYS21
A	HIS25

---

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN B 201

Chain	Residue
B	CYS7
B	CYS15
B	CYS21
B	HIS25

---

site_id	AC3
Number of Residues	4
Details	binding site for residue ZN C 201

Chain	Residue
C	CYS15
C	CYS21
C	HIS25
C	CYS7

---

site_id	AC4
Number of Residues	4
Details	binding site for residue ZN D 201

Chain	Residue
D	CYS7
D	CYS15
D	CYS21
D	HIS25

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	27
Details	Zinc finger: {"description":"C3H1-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00723","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"24434552","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32697936","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	68
Details	Region: {"description":"Oligomerization","evidences":[{"source":"PubMed","id":"22675274","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	380
Details	Region: {"description":"Globular core","evidences":[{"source":"PubMed","id":"22675274","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	148
Details	Region: {"description":"Binding to the phosphoprotein","evidences":[{"source":"PubMed","id":"32697936","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	20
Details	Site: {"description":"Involved in RNA-binding","evidences":[{"source":"PubMed","id":"32697936","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---