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6PYP

Binary Complex of Human Glycerol 3-Phosphate Dehydrogenase, R269A mutant

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005975biological_processcarbohydrate metabolic process
A0006072biological_processglycerol-3-phosphate metabolic process
A0006094biological_processgluconeogenesis
A0006127biological_processglycerol-3-phosphate shuttle
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0042803molecular_functionprotein homodimerization activity
A0045821biological_processpositive regulation of glycolytic process
A0046168biological_processglycerol-3-phosphate catabolic process
A0047952molecular_functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activity
A0051287molecular_functionNAD binding
A0070062cellular_componentextracellular exosome
A0071320biological_processcellular response to cAMP
A0071356biological_processcellular response to tumor necrosis factor
A0141152molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005975biological_processcarbohydrate metabolic process
B0006072biological_processglycerol-3-phosphate metabolic process
B0006094biological_processgluconeogenesis
B0006127biological_processglycerol-3-phosphate shuttle
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0042803molecular_functionprotein homodimerization activity
B0045821biological_processpositive regulation of glycolytic process
B0046168biological_processglycerol-3-phosphate catabolic process
B0047952molecular_functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activity
B0051287molecular_functionNAD binding
B0070062cellular_componentextracellular exosome
B0071320biological_processcellular response to cAMP
B0071356biological_processcellular response to tumor necrosis factor
B0141152molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue NAD A 401
ChainResidue
ASER11
AILE119
ALYS120
AASN151
AILE152
AALA153
AHOH502
AHOH503
AHOH577
AHOH596
AHOH641
AGLY12
AASN13
ATRP14
APHE41
AVAL93
APRO94
APHE97
ALEU118

site_idAC2
Number of Residues4
Detailsbinding site for residue PO4 A 402
ChainResidue
ALYS240
ASER249
AHOH505
AHOH567

site_idAC3
Number of Residues8
Detailsbinding site for residue 3SY A 403
ChainResidue
ALEU129
ALYS130
ALEU131
AGLU134
AASP195
APHE242
ACYS243
ASER244

site_idAC4
Number of Residues5
Detailsbinding site for residue POP B 401
ChainResidue
BGLY12
BASN13
BTRP14
BPRO94
BHOH534

site_idAC5
Number of Residues6
Detailsbinding site for residue K B 402
ChainResidue
BALA26
BALA27
BLEU29
BPHE32
BHOH526
BHOH614

Functional Information from PROSITE/UniProt
site_idPS00957
Number of Residues22
DetailsNAD_G3PDH NAD-dependent glycerol-3-phosphate dehydrogenase signature. GALKNVVAvGaGFcdGLgFGdN
ChainResidueDetails
AGLY201-ASN222

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues21
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16460752","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P13707","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"O35077","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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