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6PYP

Binary Complex of Human Glycerol 3-Phosphate Dehydrogenase, R269A mutant

Functional Information from GO Data
ChainGOidnamespacecontents
A0004368molecular_functionglycerol-3-phosphate dehydrogenase (quinone) activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005975biological_processcarbohydrate metabolic process
A0006072biological_processglycerol-3-phosphate metabolic process
A0006094biological_processgluconeogenesis
A0006116biological_processNADH oxidation
A0006127biological_processglycerophosphate shuttle
A0006734biological_processNADH metabolic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0042803molecular_functionprotein homodimerization activity
A0045821biological_processpositive regulation of glycolytic process
A0046168biological_processglycerol-3-phosphate catabolic process
A0046486biological_processglycerolipid metabolic process
A0047952molecular_functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activity
A0051287molecular_functionNAD binding
A0070062cellular_componentextracellular exosome
A0071320biological_processcellular response to cAMP
A0071356biological_processcellular response to tumor necrosis factor
A0141152molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
B0004368molecular_functionglycerol-3-phosphate dehydrogenase (quinone) activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005975biological_processcarbohydrate metabolic process
B0006072biological_processglycerol-3-phosphate metabolic process
B0006094biological_processgluconeogenesis
B0006116biological_processNADH oxidation
B0006127biological_processglycerophosphate shuttle
B0006734biological_processNADH metabolic process
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0042803molecular_functionprotein homodimerization activity
B0045821biological_processpositive regulation of glycolytic process
B0046168biological_processglycerol-3-phosphate catabolic process
B0046486biological_processglycerolipid metabolic process
B0047952molecular_functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activity
B0051287molecular_functionNAD binding
B0070062cellular_componentextracellular exosome
B0071320biological_processcellular response to cAMP
B0071356biological_processcellular response to tumor necrosis factor
B0141152molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue NAD A 401
ChainResidue
ASER11
AILE119
ALYS120
AASN151
AILE152
AALA153
AHOH502
AHOH503
AHOH577
AHOH596
AHOH641
AGLY12
AASN13
ATRP14
APHE41
AVAL93
APRO94
APHE97
ALEU118

site_idAC2
Number of Residues4
Detailsbinding site for residue PO4 A 402
ChainResidue
ALYS240
ASER249
AHOH505
AHOH567

site_idAC3
Number of Residues8
Detailsbinding site for residue 3SY A 403
ChainResidue
ALEU129
ALYS130
ALEU131
AGLU134
AASP195
APHE242
ACYS243
ASER244

site_idAC4
Number of Residues5
Detailsbinding site for residue POP B 401
ChainResidue
BGLY12
BASN13
BTRP14
BPRO94
BHOH534

site_idAC5
Number of Residues6
Detailsbinding site for residue K B 402
ChainResidue
BALA26
BALA27
BLEU29
BPHE32
BHOH526
BHOH614

Functional Information from PROSITE/UniProt
site_idPS00957
Number of Residues22
DetailsNAD_G3PDH NAD-dependent glycerol-3-phosphate dehydrogenase signature. GALKNVVAvGaGFcdGLgFGdN
ChainResidueDetails
AGLY201-ASN222

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
ALYS204
BLYS204

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:16460752
ChainResidueDetails
APHE97
AALA153
AALA269
ALYS296
AGLN298
BGLY10
BPHE41
BPHE97
BALA153
BALA269
BLYS296
BGLN298
APHE41
AGLY10

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING:
ChainResidueDetails
ALYS120
BLYS120

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
BSER154
ASER154

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P13707
ChainResidueDetails
ALYS289
BLYS289

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:O35077
ChainResidueDetails
BTYR326
ATYR326

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PDB entries from 2024-06-12

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