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6PWQ

Crystal structure of Levansucrase from Bacillus subtilis mutant S164A at 2.6 A

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0009758biological_processcarbohydrate utilization
A0016757molecular_functionglycosyltransferase activity
A0046872molecular_functionmetal ion binding
A0050053molecular_functionlevansucrase activity
B0005576cellular_componentextracellular region
B0009758biological_processcarbohydrate utilization
B0016757molecular_functionglycosyltransferase activity
B0046872molecular_functionmetal ion binding
B0050053molecular_functionlevansucrase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 501
ChainResidue
AASP241
AGLN272
ALEU308
AASN310
AASP339
AHOH631

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 502
ChainResidue
BSER154
AHIS104
AVAL128
ATHR470

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 503
ChainResidue
ALYS420
AGLY421
AHOH610
BHIS186
BTYR187

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 504
ChainResidue
AGLY273
AGLU274
AARG304
AHOH687

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 505
ChainResidue
ALYS144
AASP145
ASER146

site_idAC6
Number of Residues2
Detailsbinding site for residue SO4 A 506
ChainResidue
AMET328
ALYS329

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 507
ChainResidue
AASN422
AASN450
ALYS452

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 A 508
ChainResidue
AASP213
AHOH609

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 A 509
ChainResidue
AASN319
AASP320
AASP321

site_idAD1
Number of Residues3
Detailsbinding site for residue SO4 A 510
ChainResidue
AGLN57
AASN60
ATYR63

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 A 511
ChainResidue
AARG433
AHOH604
BTHR370
BSER371

site_idAD3
Number of Residues3
Detailsbinding site for residue PG4 A 512
ChainResidue
ATRP85
ATRP163
AGLU342

site_idAD4
Number of Residues2
Detailsbinding site for residue GOL A 513
ChainResidue
AGLY140
AARG141

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL A 514
ChainResidue
AARG360
ALYS363
AHOH695
BPRO113
BLYS114

site_idAD6
Number of Residues6
Detailsbinding site for residue CA B 501
ChainResidue
BASP241
BGLN272
BLEU308
BASN310
BASP339
BHOH621

site_idAD7
Number of Residues2
Detailsbinding site for residue SO4 B 502
ChainResidue
BGLU212
BASP213

site_idAD8
Number of Residues4
Detailsbinding site for residue SO4 B 503
ChainResidue
BGLY273
BGLU274
BGLU275
BARG304

site_idAD9
Number of Residues3
Detailsbinding site for residue SO4 B 504
ChainResidue
BHIS104
BVAL128
BTHR470

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 B 505
ChainResidue
AHIS101
BASN319
BASP320
BLYS325
BHOH601

site_idAE2
Number of Residues3
Detailsbinding site for residue SO4 B 506
ChainResidue
BGLU130
BTHR131
BSER132

site_idAE3
Number of Residues2
Detailsbinding site for residue SO4 B 507
ChainResidue
BGLY284
BLYS285

site_idAE4
Number of Residues3
Detailsbinding site for residue SO4 B 508
ChainResidue
BASN422
BASN450
BLYS452

site_idAE5
Number of Residues1
Detailsbinding site for residue SO4 B 509
ChainResidue
BTHR40

site_idAE6
Number of Residues3
Detailsbinding site for residue SO4 B 510
ChainResidue
ALYS74
BSER300
BASP301

site_idAE7
Number of Residues2
Detailsbinding site for residue SO4 B 511
ChainResidue
BMET328
BLYS329

site_idAE8
Number of Residues3
Detailsbinding site for residue PG4 B 512
ChainResidue
BTRP85
BARG246
BGLU342

site_idAE9
Number of Residues6
Detailsbinding site for residue GOL B 513
ChainResidue
BASN75
BGLY81
BASP438
BGLN440
BHOH610
BHOH643

site_idAF1
Number of Residues4
Detailsbinding site for residue GOL B 514
ChainResidue
APRO113
BARG360
BLYS363
BHOH605

site_idAF2
Number of Residues2
Detailsbinding site for residue GOL B 515
ChainResidue
BSER200
BALA201

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:14517548
ChainResidueDetails
AASP86
BASP86

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:14517548
ChainResidueDetails
AGLU342
BGLU342

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:14517548, ECO:0007744|PDB:1PT2, ECO:0007744|PDB:3BYN
ChainResidueDetails
ATRP85
BALA164
BARG246
BASP247
BGLU340
BARG360
AASP86
AALA164
AARG246
AASP247
AGLU340
AARG360
BTRP85
BASP86

site_idSWS_FT_FI4
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:14517548, ECO:0000269|PubMed:18596022, ECO:0000269|PubMed:32553967, ECO:0000269|PubMed:33303628, ECO:0007744|PDB:1OYG, ECO:0007744|PDB:1PT2, ECO:0007744|PDB:2VDT, ECO:0007744|PDB:3BYJ, ECO:0007744|PDB:3BYK, ECO:0007744|PDB:3BYN, ECO:0007744|PDB:6PWQ, ECO:0007744|PDB:6VHQ
ChainResidueDetails
AASP241
BASP339
AGLN272
ALEU308
AASN310
AASP339
BASP241
BGLN272
BLEU308
BASN310

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000305|PubMed:14517548
ChainResidueDetails
AASP247
BASP247

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 875
ChainResidueDetails
AASP86covalent catalysis
AALA164steric locator
AASP247electrostatic stabiliser
AGLU342proton shuttle (general acid/base)

site_idMCSA2
Number of Residues4
DetailsM-CSA 875
ChainResidueDetails
BASP86covalent catalysis
BALA164steric locator
BASP247electrostatic stabiliser
BGLU342proton shuttle (general acid/base)

220113

PDB entries from 2024-05-22

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