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6PUQ

1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN

Functional Information from GO Data
ChainGOidnamespacecontents
A0008033biological_processtRNA processing
A0009055molecular_functionelectron transfer activity
A0010181molecular_functionFMN binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue FMN A 301
ChainResidue
ATHR94
AALA150
AGLY188
AASP189
ATYR193
ALEU197
APHE198
ACYS199
ATYR200
AVAL225
AMG302
ALEU95
AHOH415
AHOH435
AHOH440
AHOH452
AGLY96
AGLY97
ASER98
ATHR99
APRO147
ASER148
ATYR149

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 302
ChainResidue
ASER98
ATHR99
APHE102
APHE187
AFMN301

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 303
ChainResidue
ALEU146
APRO147
ASER148
AGLY186
APHE187
ACYS199
AALA202

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 304
ChainResidue
AALA183
AVAL184
AASP206
AALA218
APRO219
ALEU220

site_idAC5
Number of Residues5
Detailsbinding site for residue MG A 305
ChainResidue
ATYR149
AILE151
ASER153
AASP156
AGLN201

site_idAC6
Number of Residues5
Detailsbinding site for residue MG A 306
ChainResidue
ASER93
ATHR94
AASN123
AASP125
AHOH459

site_idAC7
Number of Residues2
Detailsbinding site for residue PEG A 307
ChainResidue
ACYS86
AHOH405

site_idAC8
Number of Residues1
Detailsbinding site for residue ACT A 308
ChainResidue
ATHR116

Functional Information from PROSITE/UniProt
site_idPS00201
Number of Residues17
DetailsFLAVODOXIN Flavodoxin signature. IFYsTLgGsTQkfAEhV
ChainResidueDetails
AILE90-VAL106

222415

PDB entries from 2024-07-10

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