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6PTS

NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006869biological_processlipid transport
A0008289molecular_functionlipid binding
A0042157biological_processlipoprotein metabolic process
B0000139cellular_componentGolgi membrane
B0000165biological_processMAPK cascade
B0000166molecular_functionnucleotide binding
B0001889biological_processliver development
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005741cellular_componentmitochondrial outer membrane
B0005789cellular_componentendoplasmic reticulum membrane
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0007165biological_processsignal transduction
B0007265biological_processRas protein signal transduction
B0007565biological_processfemale pregnancy
B0008284biological_processpositive regulation of cell population proliferation
B0009629biological_processresponse to gravity
B0009898cellular_componentcytoplasmic side of plasma membrane
B0010628biological_processpositive regulation of gene expression
B0012505cellular_componentendomembrane system
B0016020cellular_componentmembrane
B0016787molecular_functionhydrolase activity
B0019002molecular_functionGMP binding
B0019003molecular_functionGDP binding
B0019221biological_processcytokine-mediated signaling pathway
B0030275molecular_functionLRR domain binding
B0035900biological_processresponse to isolation stress
B0043495molecular_functionprotein-membrane adaptor activity
B0044877molecular_functionprotein-containing complex binding
B0046579biological_processpositive regulation of Ras protein signal transduction
B0051384biological_processresponse to glucocorticoid
B0051385biological_processresponse to mineralocorticoid
B0051450biological_processmyoblast proliferation
B0060038biological_processcardiac muscle cell proliferation
B2000774biological_processpositive regulation of cellular senescence
C0005576cellular_componentextracellular region
C0006869biological_processlipid transport
C0008289molecular_functionlipid binding
C0042157biological_processlipoprotein metabolic process
D0007165biological_processsignal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue PCW A 401
ChainResidue
CPCW610
CPCW613
CPCW618
DPCW502
DPCW508

site_idAC2
Number of Residues8
Detailsbinding site for residue PCW A 402
ChainResidue
BPCW210
CPCW611
DPCW507
D17F513
APCW413
BGLN131
BPHE141
BILE142

site_idAC3
Number of Residues5
Detailsbinding site for residue PCW A 403
ChainResidue
APCW406
BPCW201
BPCW205
BPCW207
BPCW209

site_idAC4
Number of Residues3
Detailsbinding site for residue PCW A 404
ChainResidue
APCW407
BPCW210
C17F631

site_idAC5
Number of Residues3
Detailsbinding site for residue PCW A 405
ChainResidue
APCW414
BPCW203
D17F512

site_idAC6
Number of Residues3
Detailsbinding site for residue PCW A 406
ChainResidue
AASP246
APCW403
BPCW209

site_idAC7
Number of Residues4
Detailsbinding site for residue PCW A 407
ChainResidue
APCW404
BPCW210
BPCW211
C17F631

site_idAC8
Number of Residues2
Detailsbinding site for residue PCW A 408
ChainResidue
A17F409
D17F511

site_idAC9
Number of Residues6
Detailsbinding site for residue 17F A 409
ChainResidue
APCW408
BLYS169
BLYS172
BPCW202
DPCW504
D17F511

site_idAD1
Number of Residues2
Detailsbinding site for residue 17F A 410
ChainResidue
CPCW610
DPCW502

site_idAD2
Number of Residues6
Detailsbinding site for residue PCW A 411
ChainResidue
APCW415
APCW416
BPCW202
CPCW616
C17F630
DPCW515

site_idAD3
Number of Residues5
Detailsbinding site for residue PCW A 412
ChainResidue
APCW414
BPCW203
CPCW604
CPCW623
CPCW624

site_idAD4
Number of Residues5
Detailsbinding site for residue PCW A 413
ChainResidue
APHE214
APCW402
APCW415
CPCW611
CPCW616

site_idAD5
Number of Residues6
Detailsbinding site for residue PCW A 414
ChainResidue
APCW405
APCW412
CPCW604
CPCW613
CPCW623
CPCW624

site_idAD6
Number of Residues6
Detailsbinding site for residue PCW A 415
ChainResidue
APCW411
APCW413
CPCW615
CPCW616
CPCW617
DPCW515

site_idAD7
Number of Residues3
Detailsbinding site for residue PCW A 416
ChainResidue
APCW411
CPCW616
C17F630

site_idAD8
Number of Residues6
Detailsbinding site for residue PCW A 417
ChainResidue
CPCW603
CPCW605
CPCW610
CPCW621
CPCW622
D17F511

site_idAD9
Number of Residues4
Detailsbinding site for residue PCW C 601
ChainResidue
CLYS451
CTYR455
CPCW602
C17F626

site_idAE1
Number of Residues6
Detailsbinding site for residue PCW C 602
ChainResidue
B17F214
CPHE459
CLYS462
CPCW601
C17F626
C17F629

site_idAE2
Number of Residues5
Detailsbinding site for residue PCW C 603
ChainResidue
APCW417
CPCW604
C17F628
DPCW515
DPCW516

site_idAE3
Number of Residues11
Detailsbinding site for residue PCW C 604
ChainResidue
CPCW624
C17F627
C17F628
DPCW509
D17F514
APCW412
APCW414
B17F213
CPCW603
CPCW606
CPCW622

site_idAE4
Number of Residues6
Detailsbinding site for residue PCW C 605
ChainResidue
APCW417
CPCW610
CPCW612
CPCW618
C17F630
D17F511

site_idAE5
Number of Residues6
Detailsbinding site for residue PCW C 606
ChainResidue
B17F215
CPCW604
CPCW608
CPCW624
C17F627
C17F628

site_idAE6
Number of Residues4
Detailsbinding site for residue PCW C 607
ChainResidue
CPCW608
CPCW624
C17F626
C17F629

site_idAE7
Number of Residues9
Detailsbinding site for residue PCW C 608
ChainResidue
BPCW206
BPCW207
B17F214
CPCW606
CPCW607
CPCW614
CPCW619
C17F626
C17F632

site_idAE8
Number of Residues1
Detailsbinding site for residue PCW C 609
ChainResidue
C17F631

site_idAE9
Number of Residues8
Detailsbinding site for residue PCW C 610
ChainResidue
APCW401
A17F410
APCW417
CPCW605
CPCW612
CPCW618
CPCW622
CPCW623

site_idAF1
Number of Residues4
Detailsbinding site for residue PCW C 611
ChainResidue
APCW402
APCW413
CPCW617
CPCW625

site_idAF2
Number of Residues4
Detailsbinding site for residue PCW C 612
ChainResidue
CPCW605
CPCW610
CPCW618
D17F511

site_idAF3
Number of Residues5
Detailsbinding site for residue PCW C 613
ChainResidue
APCW401
APCW414
CPCW618
CPCW622
CPCW623

site_idAF4
Number of Residues4
Detailsbinding site for residue PCW C 614
ChainResidue
BPCW206
BPCW207
CPCW608
C17F632

site_idAF5
Number of Residues7
Detailsbinding site for residue PCW C 615
ChainResidue
APCW415
CPCW616
CPCW617
CPCW625
DPCW503
DPCW515
DPCW516

site_idAF6
Number of Residues5
Detailsbinding site for residue PCW C 616
ChainResidue
APCW411
APCW413
APCW415
APCW416
CPCW615

site_idAF7
Number of Residues7
Detailsbinding site for residue PCW C 617
ChainResidue
APCW415
CPCW611
CPCW615
CPCW621
CPCW625
DPCW503
D17F513

site_idAF8
Number of Residues5
Detailsbinding site for residue PCW C 618
ChainResidue
APCW401
CPCW605
CPCW610
CPCW612
CPCW613

site_idAF9
Number of Residues3
Detailsbinding site for residue PCW C 619
ChainResidue
CPCW608
CPCW620
C17F632

site_idAG1
Number of Residues5
Detailsbinding site for residue PCW C 620
ChainResidue
B17F215
CPCW619
CPCW621
C17F631
C17F632

site_idAG2
Number of Residues8
Detailsbinding site for residue PCW C 621
ChainResidue
APCW417
CPCW617
CPCW620
CPCW625
C17F627
C17F628
DPCW506
DPCW516

site_idAG3
Number of Residues6
Detailsbinding site for residue PCW C 622
ChainResidue
APCW417
CPCW604
CPCW610
CPCW613
CPCW623
D17F511

site_idAG4
Number of Residues6
Detailsbinding site for residue PCW C 623
ChainResidue
APCW412
APCW414
CPCW610
CPCW613
CPCW622
CPCW624

site_idAG5
Number of Residues6
Detailsbinding site for residue PCW C 624
ChainResidue
APCW412
APCW414
CPCW604
CPCW606
CPCW607
CPCW623

site_idAG6
Number of Residues5
Detailsbinding site for residue PCW C 625
ChainResidue
CPCW611
CPCW615
CPCW617
CPCW621
DPCW516

site_idAG7
Number of Residues6
Detailsbinding site for residue 17F C 626
ChainResidue
B17F214
CPCW601
CPCW602
CPCW607
CPCW608
C17F629

site_idAG8
Number of Residues6
Detailsbinding site for residue 17F C 627
ChainResidue
B17F213
B17F215
CPCW604
CPCW606
CPCW621
C17F628

site_idAG9
Number of Residues8
Detailsbinding site for residue 17F C 628
ChainResidue
B17F213
B17F215
CPCW603
CPCW604
CPCW606
CPCW621
C17F627
DPCW506

site_idAH1
Number of Residues4
Detailsbinding site for residue 17F C 629
ChainResidue
CTRP463
CPCW602
CPCW607
C17F626

site_idAH2
Number of Residues5
Detailsbinding site for residue 17F C 630
ChainResidue
APCW411
APCW416
CTYR591
CASN596
CPCW605

site_idAH3
Number of Residues5
Detailsbinding site for residue 17F C 631
ChainResidue
APCW404
APCW407
BPCW211
CPCW609
CPCW620

site_idAH4
Number of Residues7
Detailsbinding site for residue 17F C 632
ChainResidue
BPCW205
BPCW207
B17F215
CPCW608
CPCW614
CPCW619
CPCW620

site_idAH5
Number of Residues4
Detailsbinding site for residue PCW B 201
ChainResidue
APCW403
BPCW205
BPCW207
BPCW209

site_idAH6
Number of Residues4
Detailsbinding site for residue PCW B 202
ChainResidue
A17F409
APCW411
BARG135
DPCW504

site_idAH7
Number of Residues4
Detailsbinding site for residue PCW B 203
ChainResidue
APCW405
APCW412
BPCW204
BPCW208

site_idAH8
Number of Residues7
Detailsbinding site for residue PCW B 204
ChainResidue
BPCW203
BPCW208
BPCW212
B17F214
DPCW502
D17F512
D17F514

site_idAH9
Number of Residues8
Detailsbinding site for residue PCW B 205
ChainResidue
APCW403
BPCW201
BPCW206
BPCW207
BPCW212
B17F213
B17F214
C17F632

site_idAI1
Number of Residues7
Detailsbinding site for residue PCW B 206
ChainResidue
BPCW205
BPCW207
BPCW209
B17F213
CPCW608
CPCW614
DGLU474

site_idAI2
Number of Residues8
Detailsbinding site for residue PCW B 207
ChainResidue
APCW403
BPCW201
BPCW205
BPCW206
BPCW209
CPCW608
CPCW614
C17F632

site_idAI3
Number of Residues5
Detailsbinding site for residue PCW B 208
ChainResidue
BPCW203
BPCW204
BPCW212
B17F214
D17F512

site_idAI4
Number of Residues6
Detailsbinding site for residue PCW B 209
ChainResidue
APCW403
APCW406
BPCW201
BPCW206
BPCW207
B17F215

site_idAI5
Number of Residues11
Detailsbinding site for residue PCW B 210
ChainResidue
APCW402
APCW404
APCW407
BGLY151
BVAL152
BASP153
BPCW211
DPCW503
DPCW506
DPCW507
D17F513

site_idAI6
Number of Residues6
Detailsbinding site for residue PCW B 211
ChainResidue
APCW407
BPCW210
C17F631
DTHR445
DPCW505
DPCW506

site_idAI7
Number of Residues8
Detailsbinding site for residue PCW B 212
ChainResidue
BPCW204
BPCW205
BPCW208
B17F213
B17F214
DLYS457
D17F512
D17F514

site_idAI8
Number of Residues7
Detailsbinding site for residue 17F B 213
ChainResidue
BPCW205
BPCW206
BPCW212
CPCW604
C17F627
C17F628
DPCW505

site_idAI9
Number of Residues7
Detailsbinding site for residue 17F B 214
ChainResidue
BPCW204
BPCW205
BPCW208
BPCW212
CPCW602
CPCW608
C17F626

site_idAJ1
Number of Residues6
Detailsbinding site for residue 17F B 215
ChainResidue
BPCW209
CPCW606
CPCW620
C17F627
C17F628
C17F632

site_idAJ2
Number of Residues17
Detailsbinding site for residue GNP B 216
ChainResidue
BGLY13
BGLY15
BLYS16
BSER17
BALA18
BVAL29
BTYR32
BASP33
BTHR35
BTHR58
BASN116
BLYS117
BLEU120
BSER145
BALA146
BLYS147
BMG217

site_idAJ3
Number of Residues4
Detailsbinding site for residue MG B 217
ChainResidue
BSER17
BASP33
BTHR35
BGNP216

site_idAJ4
Number of Residues4
Detailsbinding site for residue PCW D 501
ChainResidue
DCYS455
DGLN456
DPCW509
D17F511

site_idAJ5
Number of Residues5
Detailsbinding site for residue PCW D 502
ChainResidue
APCW401
A17F410
BPCW204
DPCW508
D17F512

site_idAJ6
Number of Residues10
Detailsbinding site for residue PCW D 503
ChainResidue
BTYR157
BARG161
BPCW210
CPCW615
CPCW617
DLYS448
DPCW504
DPCW506
DPCW507
DPCW510

site_idAJ7
Number of Residues6
Detailsbinding site for residue PCW D 504
ChainResidue
A17F409
BLYS165
BGLU168
BPCW202
DPCW503
DPCW510

site_idAJ8
Number of Residues7
Detailsbinding site for residue PCW D 505
ChainResidue
BPCW211
B17F213
DPHE458
DPCW506
DPCW509
DPCW510
D17F513

site_idAJ9
Number of Residues10
Detailsbinding site for residue PCW D 506
ChainResidue
BPCW210
BPCW211
CPCW621
C17F628
DPHE446
DLEU447
DPCW503
DPCW505
D17F513
DPCW516

site_idAK1
Number of Residues7
Detailsbinding site for residue PCW D 507
ChainResidue
APCW402
BTHR158
BGLU162
BLYS165
BPCW210
DPCW503
D17F513

site_idAK2
Number of Residues4
Detailsbinding site for residue PCW D 508
ChainResidue
APCW401
DPCW502
D17F512
D17F514

site_idAK3
Number of Residues7
Detailsbinding site for residue PCW D 509
ChainResidue
CPCW604
DPHE451
DPHE458
DPCW501
DPCW505
DPCW510
D17F514

site_idAK4
Number of Residues8
Detailsbinding site for residue PCW D 510
ChainResidue
DPHE451
DPCW503
DPCW504
DPCW505
DPCW509
D17F513
DPCW515
DPCW516

site_idAK5
Number of Residues7
Detailsbinding site for residue 17F D 511
ChainResidue
APCW408
A17F409
APCW417
CPCW605
CPCW612
CPCW622
DPCW501

site_idAK6
Number of Residues6
Detailsbinding site for residue 17F D 512
ChainResidue
APCW405
BPCW204
BPCW208
BPCW212
DPCW502
DPCW508

site_idAK7
Number of Residues10
Detailsbinding site for residue 17F D 513
ChainResidue
APCW402
BGLY151
BASP154
BPCW210
CPCW617
DPCW505
DPCW506
DPCW507
DPCW510
DPCW516

site_idAK8
Number of Residues6
Detailsbinding site for residue 17F D 514
ChainResidue
BPCW204
BPCW212
CPCW604
DGLN456
DPCW508
DPCW509

site_idAK9
Number of Residues6
Detailsbinding site for residue PCW D 515
ChainResidue
APCW411
APCW415
CPCW603
CPCW615
DPCW510
DPCW516

site_idAL1
Number of Residues8
Detailsbinding site for residue PCW D 516
ChainResidue
CPCW603
CPCW615
CPCW621
CPCW625
DPCW506
DPCW510
D17F513
DPCW515

site_idAL2
Number of Residues4
Detailsbinding site for residue ZN D 517
ChainResidue
DCYS452
DCYS455
DHIS473
DCYS476

site_idAL3
Number of Residues4
Detailsbinding site for residue ZN D 518
ChainResidue
DHIS439
DCYS465
DCYS468
DCYS484

Functional Information from PROSITE/UniProt
site_idPS00479
Number of Residues46
DetailsZF_DAG_PE_1 Zinc finger phorbol-ester/DAG-type signature. HnFarktflklaf.CdiCqkfLlngfr.....CqtCgykfHehCstkvptm..C
ChainResidueDetails
DHIS439-CYS484

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsRepeat: {"description":"1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues42
DetailsRepeat: {"description":"2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues20
DetailsRepeat: {"description":"3; half-length"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues42
DetailsRepeat: {"description":"4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues42
DetailsRepeat: {"description":"5"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues42
DetailsRepeat: {"description":"6"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues42
DetailsRepeat: {"description":"7"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues42
DetailsRepeat: {"description":"8"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues20
DetailsRepeat: {"description":"9; half-length"}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues4
DetailsModified residue: {"description":"Methionine sulfoxide","evidences":[{"source":"PubMed","id":"12576517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (Glc) (glycation) lysine","evidences":[{"source":"PubMed","id":"8261628","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues8
DetailsMotif: {"description":"Effector region"}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22431598","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22566140","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34380736","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"35522713","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues1
DetailsModified residue: {"description":"N-acetylmethionine; in GTPase KRas; alternate","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues1
DetailsModified residue: {"description":"N-acetylthreonine; in GTPase KRas, N-terminally processed","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"22711838","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues1
DetailsModified residue: {"description":"Cysteine methyl ester","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues1
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues1
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues2
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsLipidation: {"description":"S-farnesyl cysteine","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24415755","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues1
DetailsGlycosylation: {"description":"(Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL","evidences":[{"source":"PubMed","id":"19744486","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"30442762","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI24
Number of Residues75
DetailsDomain: {"description":"RBD","evidences":[{"source":"PROSITE-ProRule","id":"PRU00262","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues46
DetailsZinc finger: {"description":"Phorbol-ester/DAG-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00226","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI26
Number of Residues8
DetailsBinding site: {}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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