6PPV

Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000956	biological_process	nuclear-transcribed mRNA catabolic process
A	0003723	molecular_function	RNA binding
B	0000398	biological_process	mRNA splicing, via spliceosome
B	0000932	cellular_component	P-body
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005681	cellular_component	spliceosomal complex
B	0005682	cellular_component	U5 snRNP
B	0005686	cellular_component	U2 snRNP
B	0005688	cellular_component	U6 snRNP
B	0005697	cellular_component	telomerase holoenzyme complex
B	0005730	cellular_component	nucleolus
B	0005737	cellular_component	cytoplasm
B	0006397	biological_process	mRNA processing
B	0008266	molecular_function	poly(U) RNA binding
B	0008380	biological_process	RNA splicing
B	0030620	molecular_function	U2 snRNA binding
B	0034337	biological_process	RNA folding
B	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
B	0071011	cellular_component	precatalytic spliceosome
B	0071013	cellular_component	catalytic step 2 spliceosome
B	0120115	cellular_component	Lsm2-8 complex
B	0140691	molecular_function	RNA folding chaperone
B	1905323	biological_process	telomerase holoenzyme complex assembly
B	1990726	cellular_component	Lsm1-7-Pat1 complex
B	1990904	cellular_component	ribonucleoprotein complex
C	0000398	biological_process	mRNA splicing, via spliceosome
C	0000932	cellular_component	P-body
C	0003682	molecular_function	chromatin binding
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005681	cellular_component	spliceosomal complex
C	0005682	cellular_component	U5 snRNP
C	0005686	cellular_component	U2 snRNP
C	0005688	cellular_component	U6 snRNP
C	0005697	cellular_component	telomerase holoenzyme complex
C	0005730	cellular_component	nucleolus
C	0005737	cellular_component	cytoplasm
C	0006397	biological_process	mRNA processing
C	0008266	molecular_function	poly(U) RNA binding
C	0008380	biological_process	RNA splicing
C	0030620	molecular_function	U2 snRNA binding
C	0033962	biological_process	P-body assembly
C	0034337	biological_process	RNA folding
C	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
C	0070034	molecular_function	telomerase RNA binding
C	0071011	cellular_component	precatalytic spliceosome
C	0071013	cellular_component	catalytic step 2 spliceosome
C	0120114	cellular_component	Sm-like protein family complex
C	0120115	cellular_component	Lsm2-8 complex
C	0140445	cellular_component	chromosome, telomeric repeat region
C	0140691	molecular_function	RNA folding chaperone
C	1905323	biological_process	telomerase holoenzyme complex assembly
C	1990726	cellular_component	Lsm1-7-Pat1 complex
C	1990904	cellular_component	ribonucleoprotein complex
D	0000387	biological_process	spliceosomal snRNP assembly
D	0000398	biological_process	mRNA splicing, via spliceosome
D	0000932	cellular_component	P-body
D	0000956	biological_process	nuclear-transcribed mRNA catabolic process
D	0003723	molecular_function	RNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005681	cellular_component	spliceosomal complex
D	0005682	cellular_component	U5 snRNP
D	0005686	cellular_component	U2 snRNP
D	0005688	cellular_component	U6 snRNP
D	0005697	cellular_component	telomerase holoenzyme complex
D	0005730	cellular_component	nucleolus
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006396	biological_process	RNA processing
D	0006397	biological_process	mRNA processing
D	0008380	biological_process	RNA splicing
D	0017070	molecular_function	U6 snRNA binding
D	0030620	molecular_function	U2 snRNA binding
D	0033962	biological_process	P-body assembly
D	0034337	biological_process	RNA folding
D	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
D	0097525	cellular_component	spliceosomal snRNP complex
D	0097526	cellular_component	spliceosomal tri-snRNP complex
D	0120115	cellular_component	Lsm2-8 complex
D	0140691	molecular_function	RNA folding chaperone
D	1905323	biological_process	telomerase holoenzyme complex assembly
D	1990726	cellular_component	Lsm1-7-Pat1 complex
D	1990904	cellular_component	ribonucleoprotein complex
E	0000398	biological_process	mRNA splicing, via spliceosome
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005681	cellular_component	spliceosomal complex
E	0005682	cellular_component	U5 snRNP
E	0005686	cellular_component	U2 snRNP
E	0005688	cellular_component	U6 snRNP
E	0005697	cellular_component	telomerase holoenzyme complex
E	0005730	cellular_component	nucleolus
E	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
E	0006364	biological_process	rRNA processing
E	0006397	biological_process	mRNA processing
E	0008033	biological_process	tRNA processing
E	0008266	molecular_function	poly(U) RNA binding
E	0008380	biological_process	RNA splicing
E	0022613	biological_process	ribonucleoprotein complex biogenesis
E	0030620	molecular_function	U2 snRNA binding
E	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
E	0120115	cellular_component	Lsm2-8 complex
E	1905323	biological_process	telomerase holoenzyme complex assembly
E	1990726	cellular_component	Lsm1-7-Pat1 complex
E	1990904	cellular_component	ribonucleoprotein complex
F	0000398	biological_process	mRNA splicing, via spliceosome
F	0000932	cellular_component	P-body
F	0003723	molecular_function	RNA binding
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005681	cellular_component	spliceosomal complex
F	0005682	cellular_component	U5 snRNP
F	0005686	cellular_component	U2 snRNP
F	0005688	cellular_component	U6 snRNP
F	0005697	cellular_component	telomerase holoenzyme complex
F	0005730	cellular_component	nucleolus
F	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
F	0005737	cellular_component	cytoplasm
F	0006364	biological_process	rRNA processing
F	0006397	biological_process	mRNA processing
F	0008033	biological_process	tRNA processing
F	0008266	molecular_function	poly(U) RNA binding
F	0008380	biological_process	RNA splicing
F	0030490	biological_process	maturation of SSU-rRNA
F	0030620	molecular_function	U2 snRNA binding
F	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
F	0120114	cellular_component	Sm-like protein family complex
F	0120115	cellular_component	Lsm2-8 complex
F	1905323	biological_process	telomerase holoenzyme complex assembly
F	1990726	cellular_component	Lsm1-7-Pat1 complex
F	1990904	cellular_component	ribonucleoprotein complex
G	0000398	biological_process	mRNA splicing, via spliceosome
G	0000956	biological_process	nuclear-transcribed mRNA catabolic process
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005681	cellular_component	spliceosomal complex
G	0005682	cellular_component	U5 snRNP
G	0005686	cellular_component	U2 snRNP
G	0005688	cellular_component	U6 snRNP
G	0005697	cellular_component	telomerase holoenzyme complex
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0006364	biological_process	rRNA processing
G	0006397	biological_process	mRNA processing
G	0008033	biological_process	tRNA processing
G	0008266	molecular_function	poly(U) RNA binding
G	0008380	biological_process	RNA splicing
G	0030620	molecular_function	U2 snRNA binding
G	0045292	biological_process	mRNA cis splicing, via spliceosome
G	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
G	0071004	cellular_component	U2-type prespliceosome
G	0071013	cellular_component	catalytic step 2 spliceosome
G	0097526	cellular_component	spliceosomal tri-snRNP complex
G	0120114	cellular_component	Sm-like protein family complex
G	0120115	cellular_component	Lsm2-8 complex
G	1905323	biological_process	telomerase holoenzyme complex assembly
G	1990726	cellular_component	Lsm1-7-Pat1 complex
G	1990904	cellular_component	ribonucleoprotein complex

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	220
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18257517","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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