6PAV

Structure of Human NMT1 with products CoA and myristoyl-lysine peptide with acetylated N-terminus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004379	molecular_function	glycylpeptide N-tetradecanoyltransferase activity
A	0006499	biological_process	N-terminal protein myristoylation
B	0004379	molecular_function	glycylpeptide N-tetradecanoyltransferase activity
B	0006499	biological_process	N-terminal protein myristoylation

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	binding site for residue COA B 501

Chain	Residue
B	TYR117
B	ARG258
B	ALA260
B	PRO261
B	LEU287
B	MYR504
B	HOH624
B	GLN118
B	PHE119
B	TRP120
B	ASN179
B	LEU248
B	VAL250
B	ARG255
B	SER256

---

site_id	AC2
Number of Residues	6
Details	binding site for residue GOL B 502

Chain	Residue
B	LYS289
B	VAL291
B	LEU478
B	TRP481
B	LYS482
B	CYS483

---

site_id	AC3
Number of Residues	6
Details	binding site for residue GOL B 503

Chain	Residue
B	GLU244
B	PRO364
B	TRP374
B	TYR423
B	LEU493
B	VAL494

---

site_id	AC4
Number of Residues	9
Details	binding site for residue MYR B 504

Chain	Residue
B	ASN246
B	PHE247
B	LEU248
B	THR268
B	TYR281
B	THR282
B	TYR479
B	COA501
D	LYS3

---

site_id	AC5
Number of Residues	18
Details	binding site for residue COA A 501

Chain	Residue
A	TYR117
A	GLN118
A	PHE119
A	TRP120
A	ASN179
A	TYR180
A	VAL181
A	LEU248
A	CYS249
A	VAL250
A	ARG255
A	SER256
A	ARG258
A	VAL259
A	ALA260
A	ILE264
A	VAL285
C	MYR101

---

site_id	AC6
Number of Residues	7
Details	binding site for residue GOL A 502

Chain	Residue
A	PRO126
A	LYS289
A	VAL291
A	LEU478
A	TRP481
A	LYS482
A	CYS483

---

site_id	AC7
Number of Residues	6
Details	binding site for residue GOL A 503

Chain	Residue
A	GLU244
A	PRO364
A	TYR423
A	LEU493
A	VAL494
A	GLN496

---

site_id	AC8
Number of Residues	17
Details	binding site for Di-peptide MYR C 101 and LYS C 3

Chain	Residue
A	TRP120
A	TYR180
A	VAL181
A	PHE190
A	ILE245
A	ASN246
A	PHE247
A	LEU248
A	THR268
A	ALA279
A	TYR281
A	THR282
A	TYR479
A	COA501
C	GLY2
C	VAL4
C	HOH201

---

Functional Information from PROSITE/UniProt

site_id	PS00975
Number of Residues	9
Details	NMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK

Chain	Residue	Details
B	GLU244-LYS252

---

site_id	PS00976
Number of Residues	7
Details	NMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG

Chain	Residue	Details
B	LYS466-GLY472

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Lipidation: {"description":"N6-myristoyl lysine","evidences":[{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	Lipidation: {"description":"N-myristoyl glycine","evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7589240","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---