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6P9D

Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F variant with FAD - Yellow fraction

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005737cellular_componentcytoplasm
A0006525biological_processarginine metabolic process
A0006527biological_processarginine catabolic process
A0008718molecular_functionD-amino-acid dehydrogenase activity
A0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 1401
ChainResidue
ATYR1020
ATRP1021
AALA1024
APRO1073
AASN1161
AHOH1519
AHOH1603

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 1402
ChainResidue
AGLY1157
AARG1160
AHOH1626
AHOH1646
AHOH1724
ATYR1020
AALA1074

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 1403
ChainResidue
AGLY1043
AARG1044
ASER1045
AGLN1162
AHIS1299

site_idAC4
Number of Residues9
Detailsbinding site for residue GOL A 1404
ChainResidue
ASER1123
AILE1124
ATRP1181
AALA1210
AGLY1211
AASN1320
AALA1321
AHOH1661
AHOH1676

site_idAC5
Number of Residues38
Detailsbinding site for residue FDA A 1405
ChainResidue
AGLY1010
AGLY1012
AILE1013
AALA1014
ALEU1031
AGLU1032
AARG1033
AGLU1034
AHIS1040
ASER1041
ATHR1042
AARG1044
ASER1045
AALA1046
AALA1047
AHIS1048
AGLU1170
AALA1171
AALA1199
AGLY1200
ATRP1202
AILE1206
AGLY1303
AARG1305
AGLN1330
AGLY1331
AGLY1332
ATYR1333
AGLY1334
AILE1335
AGLN1336
AHOH1567
AHOH1568
AHOH1608
AHOH1627
AHOH1675
AHOH1717
AHOH1722

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:20809650, ECO:0000269|PubMed:21707047
ChainResidueDetails
AALA1014
AGLU1032
ASER1041
AALA1171
AGLY1331

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Important for specificity toward positively charged substrates => ECO:0000269|PubMed:20809650
ChainResidueDetails
AGLU1087

226707

PDB entries from 2024-10-30

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