6P4F

Crystal structure of the XPB-Bax1-forked DNA ternary complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0003677	molecular_function	DNA binding
A	0004386	molecular_function	helicase activity
A	0005524	molecular_function	ATP binding
A	0006281	biological_process	DNA repair
A	0006974	biological_process	DNA damage response
A	0016787	molecular_function	hydrolase activity
A	0016853	molecular_function	isomerase activity
A	0043138	molecular_function	3'-5' DNA helicase activity
A	0120545	molecular_function	nucleic acid conformation isomerase activity
A	0140097	molecular_function	catalytic activity, acting on DNA
C	0000166	molecular_function	nucleotide binding
C	0003677	molecular_function	DNA binding
C	0004386	molecular_function	helicase activity
C	0005524	molecular_function	ATP binding
C	0006281	biological_process	DNA repair
C	0006974	biological_process	DNA damage response
C	0016787	molecular_function	hydrolase activity
C	0016853	molecular_function	isomerase activity
C	0043138	molecular_function	3'-5' DNA helicase activity
C	0120545	molecular_function	nucleic acid conformation isomerase activity
C	0140097	molecular_function	catalytic activity, acting on DNA

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue MG A 501

Chain	Residue
A	ASP155
B	PO4401
E	DA8
F	DG19

---

site_id	AC2
Number of Residues	2
Details	binding site for residue MG A 503

Chain	Residue
A	SER245
A	LEU246

---

site_id	AC3
Number of Residues	4
Details	binding site for residue MG A 506

Chain	Residue
A	LEU281
A	LEU272
A	LEU275
A	ASP277

---

site_id	AC4
Number of Residues	1
Details	binding site for residue CL A 509

Chain	Residue
A	ASP133

---

site_id	AC5
Number of Residues	5
Details	binding site for residue PO4 B 401

Chain	Residue
A	MG501
B	GLU204
E	DC7
F	DG19
F	DA20

---

site_id	AC6
Number of Residues	1
Details	binding site for residue MG B 404

Chain	Residue
B	GLU139

---

site_id	AC7
Number of Residues	1
Details	binding site for residue CL B 408

Chain	Residue
B	GLU102

---

site_id	AC8
Number of Residues	1
Details	binding site for residue CL B 410

Chain	Residue
B	GLY277

---

site_id	AC9
Number of Residues	1
Details	binding site for residue CL B 412

Chain	Residue
B	LEU17

---

site_id	AD1
Number of Residues	4
Details	binding site for residue MG C 504

Chain	Residue
C	PHE330
C	SER376
C	PHE403
C	LEU407

---

site_id	AD2
Number of Residues	4
Details	binding site for residue MG C 505

Chain	Residue
C	LEU275
C	ASP277
C	PHE278
C	LEU281

---

site_id	AD3
Number of Residues	3
Details	binding site for residue PO4 D 401

Chain	Residue
D	GLU5
G	DC10
H	DG16

---

site_id	AD4
Number of Residues	1
Details	binding site for residue MG D 404

Chain	Residue
D	LEU287

---

site_id	AD5
Number of Residues	1
Details	binding site for residue MG E 102

Chain	Residue
E	DA11

---

site_id	AD6
Number of Residues	4
Details	binding site for residue PO4 F 101

Chain	Residue
B	GLU5
E	DC10
F	DT15
F	DG16

---

site_id	AD7
Number of Residues	2
Details	binding site for residue CL G 101

Chain	Residue
G	DA11
G	DT12

---

site_id	AD8
Number of Residues	1
Details	binding site for residue MG H 101

Chain	Residue
H	DA20

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	288
Details	Domain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	14
Details	Region: {"description":"Flexible hinge region","evidences":[{"source":"PubMed","id":"32374860","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	118
Details	Region: {"description":"ThM region","evidences":[{"source":"PubMed","id":"32374860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	6
Details	Motif: {"description":"DEAH box","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Motif: {"description":"RED motif","evidences":[{"source":"PubMed","id":"32374860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	14
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	Site: {"description":"Wedge residue","evidences":[{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	184
Details	Region: {"description":"Central domain (CRD)","evidences":[{"source":"PubMed","id":"32374860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	208
Details	Region: {"description":"Nuclease domain (NUS)","evidences":[{"source":"PubMed","id":"32374860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32986831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"O29890","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---