6P4F
Crystal structure of the XPB-Bax1-forked DNA ternary complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.7883 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 214.687, 92.150, 172.128 |
Unit cell angles | 90.00, 132.24, 90.00 |
Refinement procedure
Resolution | 39.735 - 3.550 |
R-factor | 0.2513 |
Rwork | 0.250 |
R-free | 0.27160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5TNU and 6P4W |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.15.2-3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 127.432 | 39.735 | 3.740 |
High resolution limit [Å] | 3.550 | 11.230 | 3.550 |
Rmerge | 0.050 | 1.451 | |
Rmeas | 0.266 | 0.061 | 1.755 |
Rpim | 0.148 | 0.034 | 0.973 |
Total number of observations | 85678 | 2630 | 12512 |
Number of reflections | 28493 | 867 | 4105 |
<I/σ(I)> | 4.9 | 14.1 | 1.3 |
Completeness [%] | 94.1 | 85.8 | 94.3 |
Redundancy | 3 | 3 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.3 | 293 | 50mM MES, pH 5.3; 10mM MgCl2; 26% MPD |