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6P1U

Post-catalytic nicked complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and newly incorporated CMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue MN A 501
ChainResidue
AASP330
AASP332
AASP418
ANA502
ACTP509
PDA4
PC5
PHOH201

site_idAC2
Number of Residues7
Detailsbinding site for residue NA A 502
ChainResidue
AASP332
AMN501
APPV508
ACTP509
AHOH730
PC5
AASP330

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 503
ChainResidue
ATHR241
AILE243
AVAL246
AHOH800
PDT3
PHOH213

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 504
ChainResidue
AARG445
ASER458
PEDO101
TDA7

site_idAC5
Number of Residues4
Detailsbinding site for residue CL A 505
ChainResidue
ASER172
AGLY174
AARG175
AHOH737

site_idAC6
Number of Residues3
Detailsbinding site for residue CL A 506
ChainResidue
ASER474
AGLU475
AHOH842

site_idAC7
Number of Residues2
Detailsbinding site for residue CL A 507
ChainResidue
AARG393
AHOH783

site_idAC8
Number of Residues12
Detailsbinding site for residue PPV A 508
ChainResidue
AGLY319
AGLY320
AARG323
ALYS325
AASP330
AASP332
ANA502
ACTP509
AHOH636
AHOH645
AHOH740
PC5

site_idAC9
Number of Residues25
Detailsbinding site for residue CTP A 509
ChainResidue
AGLY319
AGLY320
AARG323
AGLY328
AHIS329
AASP330
AASP332
AGLY433
ATRP434
ATHR435
AGLY436
ALYS438
AGLN441
AMN501
ANA502
APPV508
AHOH612
AHOH636
AHOH730
AHOH740
PDA4
PC5
PHOH201
PHOH212
T8OG5

site_idAD1
Number of Residues4
Detailsbinding site for residue EPE A 510
ChainResidue
ALYS325
ALEU326
AGLN327
AHOH626

site_idAD2
Number of Residues4
Detailsbinding site for residue NA T 101
ChainResidue
T8OG5
THOH221
THOH226
THOH227

site_idAD3
Number of Residues8
Detailsbinding site for residue EDO P 101
ChainResidue
AARG387
AGLY433
ATRP434
AARG445
ASER458
ACL504
PDA4
PC5

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP330
AASP332
AASP418

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Responsible for the low discrimination between dNTP and rNTP
ChainResidueDetails
AGLY433

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PDB entries from 2024-09-11

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