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6P1T

Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound CMPCPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue 2TM A 501
ChainResidue
AGLY319
ATRP434
ATHR435
AGLY436
ALYS438
AGLN441
AMG502
AMG503
AEDO509
AHOH616
AHOH626
AGLY320
AHOH641
AHOH646
AHOH672
AHOH698
AHOH704
AHOH705
AHOH753
AHOH802
PDA4
T8OG5
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
AGLY433

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 502
ChainResidue
AASP330
AASP332
AASP418
A2TM501
AMG503
AHOH626
PDA4

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 503
ChainResidue
AASP330
AASP332
A2TM501
AMG502
AHOH705

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 504
ChainResidue
ATHR241
AILE243
AVAL246
AHOH830
PDT3
PHOH107

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 505
ChainResidue
AARG445
ASER458
TDA7

site_idAC6
Number of Residues4
Detailsbinding site for residue CL A 506
ChainResidue
ASER172
AGLY174
AARG175
AHOH776

site_idAC7
Number of Residues4
Detailsbinding site for residue CL A 507
ChainResidue
ASER474
AGLU475
AHOH810
AHOH881

site_idAC8
Number of Residues4
Detailsbinding site for residue EPE A 508
ChainResidue
ALYS325
ALEU326
AGLN327
AHOH661

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 509
ChainResidue
AARG387
ATRP434
AARG445
ASER458
A2TM501
AHOH616
PDA4

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 510
ChainResidue
ASER425
APHE429
AHIS459
AGLY460
AGLN471
AHOH695

site_idAD2
Number of Residues2
Detailsbinding site for residue NA T 101
ChainResidue
TDT6
THOH233

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP330
AASP332
AASP418

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Responsible for the low discrimination between dNTP and rNTP
ChainResidueDetails
AGLY433

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PDB entries from 2024-06-12

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