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6P0E

Human DNA Ligase 1 (E346A,E592A) bound to adenylated DNA containing an 8-oxo guanine:adenine base-pair

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003909molecular_functionDNA ligase activity
A0003910molecular_functionDNA ligase (ATP) activity
A0005524molecular_functionATP binding
A0006281biological_processDNA repair
A0006310biological_processDNA recombination
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue PEG A 1001
ChainResidue
ALYS487
ATRP495

site_idAC2
Number of Residues6
Detailsbinding site for residue TRS B 101
ChainResidue
BDC10
BDG11
BHOH203
BHOH213
BHOH227
DDC18

site_idAC3
Number of Residues16
Detailsbinding site for residue AMP C 101
ChainResidue
AGLU566
ATYR567
ALYS568
ATYR569
AARG573
AGLU621
APHE660
AMET723
ALYS725
ATRP742
ALYS744
AHOH1197
CDG1
CHOH201
CHOH204
AALA545

site_idAC4
Number of Residues7
Detailsbinding site for residue TRS D 101
ChainResidue
BDG9
BHOH203
BHOH206
BHOH214
DDC18
DDG19
DHOH253

Functional Information from PROSITE/UniProt
site_idPS00333
Number of Residues27
DetailsDNA_LIGASE_A2 ATP-dependent DNA ligase signature 2. EGLMVKtldvdat.YEiakrs.Hnwl..KLK
ChainResidueDetails
AGLU720-LYS746

site_idPS00697
Number of Residues9
DetailsDNA_LIGASE_A1 ATP-dependent DNA ligase AMP-binding site. EYKYDGQRA
ChainResidueDetails
AGLU566-ALA574

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsRegion: {"description":"Interaction with target DNA"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"N6-AMP-lysine intermediate","evidences":[{"source":"PROSITE-ProRule","id":"PRU10135","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15565146","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1X9N","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsSite: {"description":"Interaction with target DNA"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

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