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6OZP

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 180 min soak in 10 mM Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 301
ChainResidue
AASP52
AASP240
AHOH420
AHOH452
CU12

site_idAC2
Number of Residues6
Detailsbinding site for residue MN A 302
ChainResidue
CU12
cA11
AASP52
AASP126
AHOH413
AHOH444

site_idAC3
Number of Residues6
Detailsbinding site for residue MN A 303
ChainResidue
ALEU45
AGLN46
AHOH408
AHOH448
AHOH467
AHOH498

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 304
ChainResidue
AVAL77
AGLU80
AHOH437
AHOH464

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 305
ChainResidue
AASP39
ASER41
ASER43
BGLN112
BGLU113

site_idAC6
Number of Residues2
Detailsbinding site for residue PG4 A 306
ChainResidue
ALYS25
AHOH424

site_idAC7
Number of Residues2
Detailsbinding site for residue EDO A 307
ChainResidue
ATYR79
AGLU80

site_idAC8
Number of Residues2
Detailsbinding site for residue EDO A 308
ChainResidue
AASP201
AHIS202

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 309
ChainResidue
AHIS132
AGLN133

site_idAD1
Number of Residues6
Detailsbinding site for residue PGE A 310
ChainResidue
AASP32
AALA35
AARG38
AHOH471
BLEU145
BTHR146

site_idAD2
Number of Residues2
Detailsbinding site for residue PGE A 311
ChainResidue
AHIS225
AHIS226

site_idAD3
Number of Residues5
Detailsbinding site for residue MN B 301
ChainResidue
BASP52
BASP240
BHOH417
BHOH444
DU12

site_idAD4
Number of Residues5
Detailsbinding site for residue MN B 302
ChainResidue
BGLU12
BGLU245
BHOH416
BHOH434
BHOH486

site_idAD5
Number of Residues7
Detailsbinding site for residue MN B 303
ChainResidue
BGLN46
BTYR72
BHOH422
BHOH446
BHOH455
BHOH462
BHOH475

site_idAD6
Number of Residues10
Detailsbinding site for residue PG4 B 304
ChainResidue
AARG27
AVAL144
ALEU145
ATHR146
AGLU147
AGLU171
BASP32
BALA35
BARG38
BHOH485

site_idAD7
Number of Residues2
Detailsbinding site for residue EDO B 305
ChainResidue
BLYS25
BHOH437

site_idAD8
Number of Residues2
Detailsbinding site for residue EDO B 306
ChainResidue
BASP201
BHIS202

site_idAD9
Number of Residues1
Detailsbinding site for residue EDO B 307
ChainResidue
BVAL77

site_idAE1
Number of Residues4
Detailsbinding site for residue PGE B 308
ChainResidue
BHIS225
BHIS226
BCYS228
BHOH472

site_idAE2
Number of Residues6
Detailsbinding site for residue MN B 309
ChainResidue
BASP52
BASP126
BHOH421
BHOH429
DU12
dA11

site_idAE3
Number of Residues6
Detailsbinding site for residue MN C 101
ChainResidue
AHOH432
CU12
CA13
CHOH212
CHOH218
CHOH219

site_idAE4
Number of Residues1
Detailsbinding site for residue MN C 102
ChainResidue
CHOH204

site_idAE5
Number of Residues6
Detailsbinding site for residue MN D 101
ChainResidue
BHOH438
DU12
DA13
DHOH216
DHOH218
DHOH225

site_idAE6
Number of Residues6
Detailsbinding site for residue MN D 102
ChainResidue
DHOH207
DHOH213
DHOH228
DHOH229
CHOH223
DHOH204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

226707

PDB entries from 2024-10-30

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