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6OZN

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 15 min soak in 10 mM Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MN A 301
ChainResidue
AASP52
AASP240
AHOH422
CU12
CHOH201
CHOH210

site_idAC2
Number of Residues6
Detailsbinding site for residue MN A 302
ChainResidue
AHOH417
CA11
CU12
AASP52
AASP126
AHOH410

site_idAC3
Number of Residues5
Detailsbinding site for residue MN A 303
ChainResidue
ALEU45
AGLN46
AHOH404
AHOH430
AHOH438

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 304
ChainResidue
ATYR79
AGLU80
ALYS114
AHOH453

site_idAC5
Number of Residues3
Detailsbinding site for residue PGE A 305
ChainResidue
AHIS225
AHIS226
AARG229

site_idAC6
Number of Residues2
Detailsbinding site for residue EDO A 306
ChainResidue
AASP201
AHIS202

site_idAC7
Number of Residues2
Detailsbinding site for residue EDO A 307
ChainResidue
AGLN133
APG4312

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 308
ChainResidue
AASP39
ASER41
ASER43
BGLN112
BGLU113

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 309
ChainResidue
ALYS170
AILE173
AVAL174
AHOH473

site_idAD1
Number of Residues9
Detailsbinding site for residue P6G A 310
ChainResidue
AARG27
AVAL144
ALEU145
ATHR146
AGLU147
AGLU171
BASP32
BALA35
BARG38

site_idAD2
Number of Residues6
Detailsbinding site for residue PG4 A 311
ChainResidue
AGLU34
AALA35
AARG38
BARG27
BLEU145
BTHR146

site_idAD3
Number of Residues4
Detailsbinding site for residue PG4 A 312
ChainResidue
ALYS25
AVAL28
AEDO307
AHOH405

site_idAD4
Number of Residues6
Detailsbinding site for residue MN B 301
ChainResidue
BASP52
BASP240
BHOH435
DU12
DHOH208
DHOH217

site_idAD5
Number of Residues6
Detailsbinding site for residue MN B 302
ChainResidue
BLEU45
BGLN46
BMN303
BHOH405
BHOH412
BHOH422

site_idAD6
Number of Residues4
Detailsbinding site for residue MN B 303
ChainResidue
BGLN46
BTYR72
BMN302
BHOH405

site_idAD7
Number of Residues3
Detailsbinding site for residue PGE B 304
ChainResidue
BPRO73
BHIS226
BHOH441

site_idAD8
Number of Residues7
Detailsbinding site for residue MN C 101
ChainResidue
AHOH414
CU12
CA13
CHOH201
CHOH203
CHOH209
CHOH215

site_idAD9
Number of Residues3
Detailsbinding site for residue GOL C 102
ChainResidue
CA17
CU18
CG19

site_idAE1
Number of Residues6
Detailsbinding site for residue MN D 101
ChainResidue
BASP52
BASP126
BHOH408
BHOH415
DA11
DU12

site_idAE2
Number of Residues6
Detailsbinding site for residue MN D 102
ChainResidue
DU12
DA13
DHOH207
DHOH208
DHOH210
DHOH213

site_idAE3
Number of Residues3
Detailsbinding site for residue MN D 103
ChainResidue
DHOH209
DHOH203
DHOH205

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

237735

PDB entries from 2025-06-18

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