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6OZF

Crystal structure of Thermotoga maritima (Tm) Endonuclease V (D110N) in complex with a 12mer DNA containing an inosine followed by a ribo-adenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003727molecular_functionsingle-stranded RNA binding
A0004519molecular_functionendonuclease activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0016891molecular_functionRNA endonuclease activity, producing 5'-phosphomonoesters
A0043737molecular_functiondeoxyribonuclease V activity
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003727molecular_functionsingle-stranded RNA binding
B0004519molecular_functionendonuclease activity
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0016891molecular_functionRNA endonuclease activity, producing 5'-phosphomonoesters
B0043737molecular_functiondeoxyribonuclease V activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 301
ChainResidue
AASP43
AHIS214
AHOH419
AHOH496
CDG7
CHOH227

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 302
ChainResidue
AHOH412
CA6
CDG7
AASP43
ALEU44
AASN110

site_idAC3
Number of Residues6
Detailsbinding site for residue CA B 301
ChainResidue
BASP43
BHIS214
BHOH415
BHOH519
DDG7
DHOH226

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL B 302
ChainResidue
AASP10
BGLU72
BLYS99
BHOH426

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL B 303
ChainResidue
AARG141
AGLY144
ATHR145
BLYS222
BPHE225

site_idAC6
Number of Residues1
Detailsbinding site for residue EDO B 304
ChainResidue
BTRP156

site_idAC7
Number of Residues7
Detailsbinding site for residue PG4 B 305
ChainResidue
BGLU68
BVAL69
BVAL70
BSER71
BLYS99
BARG101
BHOH466

site_idAC8
Number of Residues5
Detailsbinding site for residue NA B 306
ChainResidue
BLEU44
BASN110
BHOH435
DA6
DDG7

site_idAC9
Number of Residues7
Detailsbinding site for residue CA C 101
ChainResidue
CDT3
CDG7
CHOH212
CHOH216
CHOH220
CHOH222
CHOH228

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO C 102
ChainResidue
AARG118
BPRO202
BGLY203
CDG4
CHOH219

site_idAD2
Number of Residues7
Detailsbinding site for residue CA D 101
ChainResidue
DDT3
DDG7
DHOH210
DHOH215
DHOH218
DHOH219
DHOH222

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP43
AASN110
BASP43
BASN110

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA
ChainResidueDetails
ATYR80
BTYR80

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PDB entries from 2024-07-24

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