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6OHO

Structure of human Phospholipase D2 catalytic domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004630molecular_functionphospholipase D activity
A0006654biological_processphosphatidic acid biosynthetic process
A0035556biological_processintracellular signal transduction
B0003824molecular_functioncatalytic activity
B0004630molecular_functionphospholipase D activity
B0006654biological_processphosphatidic acid biosynthetic process
B0035556biological_processintracellular signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue SO4 A 1001
ChainResidue
ALYS403
ALYS417
AARG431
ALYS570
ALYS572
ATYR573
AHOH1136

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 1002
ChainResidue
AASN802
AHOH1121
ATRP673
ACYS674

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 1003
ChainResidue
AHIS321
AARG322
APRO329

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 1004
ChainResidue
ALYS722
ATRP729
AARG730

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 A 1005
ChainResidue
AHIS432
APRO433
AASP434
AGLN435
AHOH1128
AHOH1181

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 1006
ChainResidue
AVAL339
AASN340
AASP467
ALEU468
AHOH1112
AHOH1116

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 A 1007
ChainResidue
AGLU406
AGLY414
AARG418
AARG431
AHOH1166

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 A 1008
ChainResidue
AHIS469
ALYS817
ALEU832
AASP833
ALEU834
AARG835

site_idAC9
Number of Residues9
Detailsbinding site for residue GOL A 1009
ChainResidue
ATRP364
AHIS442
ALYS444
AASP459
AARG464
AGLN642
AHIS756
ALYS758
AHOH1169

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL A 1010
ChainResidue
AARG730
AASN867
AHIS905
ALEU908
ALYS909

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL A 1011
ChainResidue
AHIS704
AARG712
ALEU911
AGLU914
ASER915

site_idAD3
Number of Residues3
Detailsbinding site for residue GOL A 1012
ChainResidue
AGLN634
AARG664
ATRP673

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 B 1001
ChainResidue
BHIS321
BARG322
BPRO329
BHOH1104
BHOH1138

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 B 1002
ChainResidue
BTRP673
BCYS674
BASN802
BHOH1136
BHOH1154

site_idAD6
Number of Residues7
Detailsbinding site for residue SO4 B 1003
ChainResidue
BVAL339
BASN340
BALA342
BGLY343
BASP467
BLEU468
BHOH1159

site_idAD7
Number of Residues2
Detailsbinding site for residue SO4 B 1004
ChainResidue
BTRP729
BARG730

site_idAD8
Number of Residues4
Detailsbinding site for residue SO4 B 1005
ChainResidue
BLYS417
BARG431
BLYS572
BTYR573

site_idAD9
Number of Residues5
Detailsbinding site for residue SO4 B 1006
ChainResidue
BARG471
BLEU472
BTHR473
BGLY742
BGLU743

site_idAE1
Number of Residues2
Detailsbinding site for residue SO4 B 1007
ChainResidue
BGLY726
BTHR727

site_idAE2
Number of Residues3
Detailsbinding site for residue SO4 B 1008
ChainResidue
BHIS377
BLYS817
BARG835

site_idAE3
Number of Residues3
Detailsbinding site for residue SO4 B 1009
ChainResidue
BARG418
BARG431
BHOH1106

site_idAE4
Number of Residues9
Detailsbinding site for residue GOL B 1010
ChainResidue
BHIS442
BLYS444
BASP459
BARG464
BGLN642
BHIS756
BASN773
BHOH1131
BTRP364

site_idAE5
Number of Residues5
Detailsbinding site for residue GOL B 1011
ChainResidue
BARG730
BASN867
BHIS905
BPHE906
BLEU908

site_idAE6
Number of Residues4
Detailsbinding site for residue GOL B 1012
ChainResidue
BCYS711
BGLY713
BHIS719
BHOH1173

site_idAE7
Number of Residues5
Detailsbinding site for residue GOL B 1013
ChainResidue
BHIS432
BPRO433
BASP434
BGLN435
BTHR569

site_idAE8
Number of Residues9
Detailsbinding site for Di-peptide DTT B 1014 and CYS B 839
ChainResidue
BARG676
BASN802
BASP833
BASP836
BILE838
BASP840
BASP841
BPHE842
BPHE843

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues54
DetailsDomain: {"description":"PLD phosphodiesterase 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00153","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues54
DetailsDomain: {"description":"PLD phosphodiesterase 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00153","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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