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6O5F

Crystal structure of DEAD-box RNA helicase DDX3X at pre-unwound state

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
B0003676molecular_functionnucleic acid binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 701
ChainResidue
ATHR323
AGLY325
AARG326

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 702
ChainResidue
ASER476
AGLN477
AARG478
BASN173
BHOH821

site_idAC3
Number of Residues7
Detailsbinding site for residue CL A 703
ChainResidue
APRO267
AGLY337
ALEU338
AASP339
APHE340
ACYS341
ATYR266

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 704
ChainResidue
AGLY227
ASER228
AGLY229
ALYS230

site_idAC5
Number of Residues3
Detailsbinding site for residue CL B 701
ChainResidue
BTHR323
BGLY325
BARG326

site_idAC6
Number of Residues7
Detailsbinding site for residue CL B 702
ChainResidue
BTYR266
BPRO267
BGLY337
BLEU338
BASP339
BPHE340
BCYS341

site_idAC7
Number of Residues5
Detailsbinding site for residue CL B 703
ChainResidue
AGLY172
AASN173
BSER476
BGLN477
BARG478

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADRmL
ChainResidueDetails
AVAL345-LEU353

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ATYR200
AALA224
BTYR200
BALA224

site_idSWS_FT_FI2
Number of Residues12
DetailsMOD_RES: Phosphoserine; by TBK1; in vitro => ECO:0000269|PubMed:18583960
ChainResidueDetails
ASER181
BSER442
BSER456
BSER520
ASER240
ASER269
ASER442
ASER456
ASER520
BSER181
BSER240
BSER269

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by TBK1 => ECO:0000269|PubMed:18583960, ECO:0007744|PubMed:24275569
ChainResidueDetails
ASER183
BSER183

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphoserine; by CSNK1E and TBK1; in vitro => ECO:0000269|PubMed:18583960, ECO:0000269|PubMed:29222110
ChainResidueDetails
ASER429
ASER543
BSER429
BSER543

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: Phosphothreonine; by TBK1; in vitro => ECO:0000269|PubMed:18583960
ChainResidueDetails
ATHR438
ATHR542
BTHR438
BTHR542

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphothreonine; by CSNK1E; in vitro => ECO:0000269|PubMed:29222110
ChainResidueDetails
ATHR469
BTHR469

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: Phosphoserine; by CSNK1E; in vitro => ECO:0000269|PubMed:29222110
ChainResidueDetails
ASER470
BSER470

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Omega-N-methylarginine => ECO:0007744|PubMed:24129315
ChainResidueDetails
AARG592
BARG592

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER594
ASER605
BSER594
BSER605

site_idSWS_FT_FI10
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS215
BLYS215

222415

PDB entries from 2024-07-10

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