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6O3U

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with 06:0 PA

Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue GOL L 301
ChainResidue
LLYS39

site_idAC2
Number of Residues3
Detailsbinding site for residue GOL L 302
ChainResidue
LGLY60
LARG61
LHOH402

site_idAC3
Number of Residues3
Detailsbinding site for residue GOL H 301
ChainResidue
HGLY42
LGLN38
LGLY41

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 H 302
ChainResidue
HGLN43
HARG44

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 H 303
ChainResidue
HPRO100
HLEU100
HARG100
LTYR49

site_idAC6
Number of Residues8
Detailsbinding site for residue SO4 H 304
ChainResidue
HPRO175
HVAL177
HSER186
HLEU187
HSER188
LSER162
LSER176
LTHR178

site_idAC7
Number of Residues4
Detailsbinding site for residue 44E H 305
ChainResidue
HSER28
HPHE29
HSER30
HSER31

site_idAC8
Number of Residues3
Detailsbinding site for residue 44E H 306
ChainResidue
HASP72
HARG73
HSER74

site_idAC9
Number of Residues2
Detailsbinding site for residue GOL A 301
ChainResidue
APRO8
AGLY9

site_idAD1
Number of Residues2
Detailsbinding site for residue GOL A 302
ChainResidue
ALYS39
AGLN42

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL A 303
ChainResidue
AGLY60
AARG61
AARG77

site_idAD3
Number of Residues7
Detailsbinding site for residue SO4 A 304
ChainResidue
AGLU161
ASER162
ASER176
ATHR178
BVAL177
BSER186
BSER188

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 B 301
ChainResidue
BLYS13
BSER115
DLYS13
DSER115
FLYS13
FSER115

site_idAD5
Number of Residues4
Detailsbinding site for residue SO4 B 302
ChainResidue
ATYR91
BARG100
BLEU100
BARG100

site_idAD6
Number of Residues2
Detailsbinding site for residue SO4 B 303
ChainResidue
BGLN43
BARG44

site_idAD7
Number of Residues2
Detailsbinding site for residue SO4 B 304
ChainResidue
BARG62
BARG66

site_idAD8
Number of Residues4
Detailsbinding site for residue 44E B 305
ChainResidue
BASP72
BARG73
BSER74
D44E306

site_idAD9
Number of Residues3
Detailsbinding site for residue 44E B 306
ChainResidue
BSER28
BPHE29
BSER30

site_idAE1
Number of Residues3
Detailsbinding site for residue GOL C 301
ChainResidue
CPRO59
CGLY60
CARG61

site_idAE2
Number of Residues2
Detailsbinding site for residue GOL D 301
ChainResidue
DARG62
DARG66

site_idAE3
Number of Residues6
Detailsbinding site for residue SO4 D 302
ChainResidue
BLYS12
BSER16
DLYS12
DSER16
FLYS12
FSER16

site_idAE4
Number of Residues2
Detailsbinding site for residue SO4 D 303
ChainResidue
DGLN43
DARG44

site_idAE5
Number of Residues8
Detailsbinding site for residue SO4 D 304
ChainResidue
CSER162
CSER176
DPHE174
DPRO175
DVAL177
DSER186
DLEU187
DSER188

site_idAE6
Number of Residues4
Detailsbinding site for residue 44E D 305
ChainResidue
DSER28
DPHE29
DSER30
DSER31

site_idAE7
Number of Residues7
Detailsbinding site for residue 44E D 306
ChainResidue
BARG73
B44E305
DALA71
DASP72
DARG73
DSER74
F44E306

site_idAE8
Number of Residues5
Detailsbinding site for residue GOL E 301
ChainResidue
EGLN42
EGLN38
ELYS39
EALA40
EGLY41

site_idAE9
Number of Residues4
Detailsbinding site for residue GOL F 301
ChainResidue
BSER17
DSER17
DGLU81
FSER17

site_idAF1
Number of Residues2
Detailsbinding site for residue SO4 F 302
ChainResidue
FARG62
FARG66

site_idAF2
Number of Residues2
Detailsbinding site for residue SO4 F 303
ChainResidue
FGLN43
FARG44

site_idAF3
Number of Residues9
Detailsbinding site for residue SO4 F 304
ChainResidue
ESER162
ESER176
ETHR178
FPHE174
FPRO175
FVAL177
FSER186
FLEU187
FSER188

site_idAF4
Number of Residues4
Detailsbinding site for residue 44E F 305
ChainResidue
BVAL54
FSER28
FPHE29
FSER30

site_idAF5
Number of Residues4
Detailsbinding site for residue 44E F 306
ChainResidue
D44E306
FASP72
FARG73
FSER74

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
ChainResidueDetails
HTYR206-HIS212
LTYR192-HIS198

222624

PDB entries from 2024-07-17

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