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6O3P

Crystal structure of the catalytic domain of mouse Nudt12 in complex with AMP and 3 Mg2+ ions

Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue AMP A 501
ChainResidue
AASP322
AMG504
AHOH632
AHOH639
AHOH644
AHOH650
AHOH669
AHOH694
BVAL313
BASN315
BTYR318
AALA354
BHOH684
AGLY355
APHE356
AGLU370
AGLU374
AGLU415
AMG502
AMG503

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 502
ChainResidue
AALA354
AGLU374
AGLU415
AAMP501
AMG503
AHOH622
AHOH639

site_idAC3
Number of Residues8
Detailsbinding site for residue MG A 503
ChainResidue
AGLU370
AGLU374
AGLU415
AAMP501
AMG502
AMG504
AHOH638
AHOH694

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 504
ChainResidue
AGLU370
AAMP501
AMG503
AHOH644
AHOH650
AHOH674
AHOH694

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 505
ChainResidue
ACYS284
ACYS287
ACYS302
ACYS307

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS284
BCYS287
BCYS302
BCYS307

site_idAC7
Number of Residues19
Detailsbinding site for residue AMP B 502
ChainResidue
AVAL313
AASN315
ATYR318
BASP322
BALA354
BGLY355
BPHE356
BGLU370
BGLU374
BGLU415
BMG503
BMG504
BMG505
BHOH631
BHOH652
BHOH655
BHOH675
BHOH712
BHOH716

site_idAC8
Number of Residues7
Detailsbinding site for residue MG B 503
ChainResidue
BALA354
BGLU374
BGLU415
BAMP502
BMG504
BHOH625
BHOH631

site_idAC9
Number of Residues8
Detailsbinding site for residue MG B 504
ChainResidue
BGLU370
BGLU374
BGLU415
BAMP502
BMG503
BMG505
BHOH609
BHOH712

site_idAD1
Number of Residues7
Detailsbinding site for residue MG B 505
ChainResidue
BGLU370
BAMP502
BMG504
BHOH652
BHOH655
BHOH690
BHOH712

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GfiepgEtiedAVrREVeEEsG
ChainResidueDetails
AGLY355-GLY376

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|PubMed:31101919, ECO:0007744|PDB:6O3P
ChainResidueDetails
ACYS284
BCYS284
BCYS287
BCYS302
BCYS307
BTYR318
BALA354
BGLU370
BGLU374
BGLU415
ACYS287
ACYS302
ACYS307
ATYR318
AALA354
AGLU370
AGLU374
AGLU415

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: N6-succinyllysine => ECO:0007744|PubMed:23806337
ChainResidueDetails
ALYS185
ALYS292
BLYS185
BLYS292

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PDB entries from 2025-07-02

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