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6NS0

Crystal Structure of Lysyl-tRNA Synthetase from Chlamydia trachomatis complexed with L-lysine and Cladosporin

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004824molecular_functionlysine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006430biological_processlysyl-tRNA aminoacylation
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0000049molecular_functiontRNA binding
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0003676molecular_functionnucleic acid binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004824molecular_functionlysine-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006412biological_processtranslation
B0006418biological_processtRNA aminoacylation for protein translation
B0006430biological_processlysyl-tRNA aminoacylation
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue LYS A 601
ChainResidue
AGLY225
AGLY491
AGLY493
AKRS602
AHOH750
ASER247
AGLU249
AARG271
AGLU287
ATYR289
AASN441
ATYR443
AGLU445

site_idAC2
Number of Residues18
Detailsbinding site for residue KRS A 602
ChainResidue
AARG271
AGLU273
ATHR278
AHIS279
AASN280
APHE283
AMET285
ALEU439
ACYS440
AASN441
AGLY493
AILE494
AGLY495
AARG498
AILE509
ALYS601
AHOH802
AHOH862

site_idAC3
Number of Residues12
Detailsbinding site for residue PG4 A 603
ChainResidue
AGLY224
AGLY225
AALA226
AGLU227
ATHR412
ATHR413
APRO414
ATYR443
AASP475
AHOH713
AHOH796
AHOH841

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 604
ChainResidue
AASN29
APRO32
ALEU153

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 605
ChainResidue
APHE76
AILE120
AGLU121
ALEU124
AASP125
ALEU126

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 606
ChainResidue
AARG77
APHE84
AGLN95

site_idAC7
Number of Residues3
Detailsbinding site for residue EDO A 607
ChainResidue
APRO162
AILE183
ASER184

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 608
ChainResidue
AVAL188
ATHR191
ATHR504
AALA506
AASP511
AHOH775
AHOH869

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 609
ChainResidue
AGLU213
AGLU215
BARG203

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 610
ChainResidue
ALEU199
AARG203
BARG203
BGLU213
BGLU215

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 611
ChainResidue
ALEU219
AGLN220
ATHR221
AEDO612
BPHE515

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 612
ChainResidue
AGLN220
AALA251
ALYS254
AEDO611
AHOH702
BPHE515

site_idAD4
Number of Residues5
Detailsbinding site for residue EDO A 613
ChainResidue
ATYR350
ALYS398
AILE400
AALA401
AHIS403

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO A 614
ChainResidue
ALYS344
ATHR425
ALEU426
AHOH797
AHOH803

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO A 615
ChainResidue
AHOH853
AMET343
AALA388
AASP392
AGLU431
AHOH705

site_idAD7
Number of Residues6
Detailsbinding site for residue EDO A 616
ChainResidue
ALYS344
AASP354
AVAL355
AASP356
AHOH790
AHOH944

site_idAD8
Number of Residues8
Detailsbinding site for residue EDO A 617
ChainResidue
ALEU450
AARG453
ALEU479
ACYS483
BTYR7
BLEU8
BTYR13
BHOH863

site_idAD9
Number of Residues2
Detailsbinding site for residue EDO A 618
ChainResidue
AARG197
ALEU201

site_idAE1
Number of Residues2
Detailsbinding site for residue EDO A 619
ChainResidue
AGLU273
AGLY274

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO A 620
ChainResidue
AMET299
AGLU303
APRO337
ATRP338
AARG340
AHIS404

site_idAE3
Number of Residues6
Detailsbinding site for residue EDO A 621
ChainResidue
AASP207
APHE211
ALEU212
AGLU213
BSER196
BLYS200

site_idAE4
Number of Residues4
Detailsbinding site for residue PEG A 622
ChainResidue
AARG420
BPRO32
BTYR33
BGLN34

site_idAE5
Number of Residues4
Detailsbinding site for residue NA A 623
ChainResidue
ALYS463
AASN466
ASER469
AHOH885

site_idAE6
Number of Residues4
Detailsbinding site for residue NA A 624
ChainResidue
AGLU368
AHOH728
AHOH926
AHOH948

site_idAE7
Number of Residues8
Detailsbinding site for residue EDO B 701
ChainResidue
ATYR7
ALEU8
ATYR13
BPRO449
BLEU450
BARG453
BLEU479
BCYS483

site_idAE8
Number of Residues5
Detailsbinding site for residue EDO B 702
ChainResidue
ASER261
AHOH771
BGLU40
BASP89
BHOH913

site_idAE9
Number of Residues13
Detailsbinding site for residue LYS B 703
ChainResidue
BGLY225
BALA226
BSER247
BGLU249
BARG271
BGLU287
BTYR289
BASN441
BTYR443
BGLU445
BGLY491
BKRS704
BHOH844

site_idAF1
Number of Residues16
Detailsbinding site for residue KRS B 704
ChainResidue
BARG271
BGLU273
BTHR278
BHIS279
BASN280
BPHE283
BLEU439
BCYS440
BASN441
BGLY493
BILE494
BGLY495
BARG498
BLYS703
BHOH867
BHOH930

site_idAF2
Number of Residues7
Detailsbinding site for residue EDO B 705
ChainResidue
BLEU73
BPHE76
BILE120
BGLU121
BLEU124
BASP125
BHOH801

site_idAF3
Number of Residues11
Detailsbinding site for residue PG4 B 706
ChainResidue
BGLY224
BGLY225
BALA226
BTHR412
BTHR413
BPRO414
BASN441
BTYR443
BGLN459
BASP475
BHOH817

site_idAF4
Number of Residues3
Detailsbinding site for residue EDO B 707
ChainResidue
BALA388
BASP392
BGLU431

site_idAF5
Number of Residues2
Detailsbinding site for residue EDO B 708
ChainResidue
BARG24
BASN29

site_idAF6
Number of Residues2
Detailsbinding site for residue EDO B 709
ChainResidue
BASN29
BHOH847

site_idAF7
Number of Residues3
Detailsbinding site for residue EDO B 710
ChainResidue
ALEU450
BTYR13
BHOH863

site_idAF8
Number of Residues4
Detailsbinding site for residue EDO B 711
ChainResidue
BGLU22
BLEU26
BLYS123
BHOH827

site_idAF9
Number of Residues5
Detailsbinding site for residue EDO B 712
ChainResidue
BARG45
BGLN86
BGLN95
BGLU143
BHOH815

site_idAG1
Number of Residues1
Detailsbinding site for residue EDO B 713
ChainResidue
BSER56

site_idAG2
Number of Residues5
Detailsbinding site for residue EDO B 714
ChainResidue
AHOH780
BPRO162
BASP170
BARG174
BHOH909

site_idAG3
Number of Residues4
Detailsbinding site for residue EDO B 715
ChainResidue
APHE515
BALA251
BLYS254
BEDO716

site_idAG4
Number of Residues5
Detailsbinding site for residue EDO B 716
ChainResidue
APHE515
APRO516
BLEU219
BGLN220
BEDO715

site_idAG5
Number of Residues4
Detailsbinding site for residue EDO B 717
ChainResidue
BASP276
BARG277
BTHR278
BHOH897

site_idAG6
Number of Residues4
Detailsbinding site for residue EDO B 718
ChainResidue
BLYS344
BARG383
BILE387
BTHR425

site_idAG7
Number of Residues4
Detailsbinding site for residue EDO B 719
ChainResidue
BGLU273
BGLY274
BASP276
BHIS279

site_idAG8
Number of Residues1
Detailsbinding site for residue CL B 720
ChainResidue
BLEU168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00252
ChainResidueDetails
AGLU431
AGLU438
BGLU431
BGLU438

237735

PDB entries from 2025-06-18

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