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6NR0

SIRT2(56-356) with covalent intermediate between mechanism-based inhibitor Glucose-TM-1beta and 1'-SH ADP-ribose

Functional Information from GO Data
ChainGOidnamespacecontents
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
B0017136molecular_functionNAD-dependent histone deacetylase activity
B0051287molecular_functionNAD binding
B0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS195
ACYS200
ACYS221
ACYS224

site_idAC2
Number of Residues2
Detailsbinding site for residue NA A 404
ChainResidue
AGLU288
AKXG403

site_idAC3
Number of Residues2
Detailsbinding site for residue NA A 405
ChainResidue
AGLY306
AASP308

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 406
ChainResidue
ALEU162
ALYS253
AARG78

site_idAC5
Number of Residues2
Detailsbinding site for residue GOL A 407
ChainResidue
ATRP320
ALEU321

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS195
BCYS200
BCYS221
BCYS224

site_idAC7
Number of Residues6
Detailsbinding site for residue NA B 404
ChainResidue
BALA85
BPHE96
BGLN167
BASN168
BKXG403
BHOH554

site_idAC8
Number of Residues3
Detailsbinding site for residue NA B 405
ChainResidue
BGLU288
BKXG403
BHOH501

site_idAC9
Number of Residues7
Detailsbinding site for residue SO4 B 406
ChainResidue
AGLN292
AHOH531
BARG97
BTYR104
BGLU116
BGLN265
BHOH524

site_idAD1
Number of Residues2
Detailsbinding site for residue GOL B 407
ChainResidue
BTRP320
BLEU321

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL B 409
ChainResidue
BGLU333
BGLY336
BLYS338
BLYS339

site_idAD3
Number of Residues32
Detailsbinding site for residues KXJ A 402 and KXG A 403
ChainResidue
AGLY84
AALA85
AGLY86
ATHR89
AASP95
APHE96
AARG97
APHE119
ALEU138
APRO140
AGLN167
AHIS187
AILE232
AVAL233
APHE235
AGLY236
AGLU237
ASER238
ALEU239
AGLY261
ATHR262
ASER263
AGLN267
APRO268
AASN286
ALYS287
AGLU288
AGLY322
AGLU323
ACYS324
ANA404
AHOH536

site_idAD4
Number of Residues33
Detailsbinding site for residues KXJ B 402 and KXG B 403
ChainResidue
BGLY322
BGLU323
BCYS324
BNA404
BNA405
BGLY84
BALA85
BGLY86
BTHR89
BASP95
BPHE96
BARG97
BSER98
BPHE119
BPHE131
BLEU134
BLEU138
BGLN167
BHIS187
BILE232
BVAL233
BPHE235
BGLY236
BGLU237
BGLY261
BTHR262
BSER263
BVAL266
BGLN267
BPRO268
BASN286
BLYS287
BGLU288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236
ChainResidueDetails
ACYS224
BCYS224

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25672491, ECO:0007744|PDB:4RMG
ChainResidueDetails
ASER122
BGLU323
APHE132
ATYR204
AMET299
AGLU323
BSER122
BPHE132
BTYR204
BMET299

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:11427894, ECO:0000269|PubMed:23454361, ECO:0000269|PubMed:24389023, ECO:0000269|PubMed:25672491, ECO:0000269|PubMed:25704306, ECO:0007744|PDB:4R8M
ChainResidueDetails
AILE232
AGLU237
ALEU258
AGLY261
BILE232
BGLU237
BLEU258
BGLY261

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0007744|PubMed:19413330
ChainResidueDetails
AASP39
BASP39

site_idSWS_FT_FI5
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
AASP60
ALEU62
ALEU64
BASP60
BLEU62
BLEU64

site_idSWS_FT_FI6
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q5RJQ4
ChainResidueDetails
ASER90
AGLU137
APHE244
BSER90
BGLU137
BPHE244

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PDB entries from 2024-07-10

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