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6NFP

1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168

Functional Information from GO Data
ChainGOidnamespacecontents
A0000050biological_processurea cycle
A0004053molecular_functionarginase activity
A0005737cellular_componentcytoplasm
A0006525biological_processarginine metabolic process
A0016787molecular_functionhydrolase activity
A0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
B0000050biological_processurea cycle
B0004053molecular_functionarginase activity
B0005737cellular_componentcytoplasm
B0006525biological_processarginine metabolic process
B0016787molecular_functionhydrolase activity
B0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
C0000050biological_processurea cycle
C0004053molecular_functionarginase activity
C0005737cellular_componentcytoplasm
C0006525biological_processarginine metabolic process
C0016787molecular_functionhydrolase activity
C0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
D0000050biological_processurea cycle
D0004053molecular_functionarginase activity
D0005737cellular_componentcytoplasm
D0006525biological_processarginine metabolic process
D0016787molecular_functionhydrolase activity
D0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
E0000050biological_processurea cycle
E0004053molecular_functionarginase activity
E0005737cellular_componentcytoplasm
E0006525biological_processarginine metabolic process
E0016787molecular_functionhydrolase activity
E0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
F0000050biological_processurea cycle
F0004053molecular_functionarginase activity
F0005737cellular_componentcytoplasm
F0006525biological_processarginine metabolic process
F0016787molecular_functionhydrolase activity
F0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 301
ChainResidue
ALEU128
AHIS149
AHOH565

site_idAC2
Number of Residues4
Detailsbinding site for residue CL A 302
ChainResidue
APRO11
AMET12
AASP13
AHOH558

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 303
ChainResidue
ALYS189
AVAL190

site_idAC4
Number of Residues1
Detailsbinding site for residue CL A 304
ChainResidue
AALA31

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 305
ChainResidue
AASP274
AHOH411
AHOH467
DASP274
DHOH518
DHOH558

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 306
ChainResidue
AASP120
AHIS122
AASP223
AASP225
AMG307
ASO4318

site_idAC7
Number of Residues6
Detailsbinding site for residue MG A 307
ChainResidue
AHIS97
AASP120
AASP124
AASP223
AMG306
ASO4318

site_idAC8
Number of Residues3
Detailsbinding site for residue FMT A 308
ChainResidue
ALEU290
ALEU291
AHOH518

site_idAC9
Number of Residues6
Detailsbinding site for residue FMT A 309
ChainResidue
AALA108
ATYR111
AASP112
AASN113
ALEU114
ALYS161

site_idAD1
Number of Residues1
Detailsbinding site for residue URE A 310
ChainResidue
ALEU125

site_idAD2
Number of Residues3
Detailsbinding site for residue URE A 311
ChainResidue
ALEU209
AASP210
ASER213

site_idAD3
Number of Residues5
Detailsbinding site for residue URE A 312
ChainResidue
ATYR245
AGLU285
AHOH403
BARG173
BVAL240

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 313
ChainResidue
ALYS278
ATHR282
BVAL240

site_idAD5
Number of Residues3
Detailsbinding site for residue EDO A 314
ChainResidue
APRO229
APRO238
AHOH580

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO A 315
ChainResidue
ASER38
AGLY41
ATYR42

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO A 316
ChainResidue
ASER26
AARG29
AHOH402
AHOH590
DASP22

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO A 317
ChainResidue
AMET40
ALEU291
AGLY292
AHOH426

site_idAD9
Number of Residues11
Detailsbinding site for residue SO4 A 318
ChainResidue
AARG19
AASP120
AHIS122
AASP124
AHIS137
AASP223
AASP225
ATHR237
AGLU268
AMG306
AMG307

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 A 319
ChainResidue
AASP210
ATYR211
ASER213
AALA214
AHOH401

site_idAE2
Number of Residues3
Detailsbinding site for residue CL B 301
ChainResidue
BLEU128
BHIS149
BHOH599

site_idAE3
Number of Residues6
Detailsbinding site for residue NA B 302
ChainResidue
BASP274
BHOH530
CASP274
CHOH417
CHOH471
CHOH614

site_idAE4
Number of Residues6
Detailsbinding site for residue MG B 303
ChainResidue
BASP120
BHIS122
BASP223
BASP225
BMG304
BSO4313

site_idAE5
Number of Residues6
Detailsbinding site for residue MG B 304
ChainResidue
BMG303
BSO4313
BHIS97
BASP120
BASP124
BASP223

site_idAE6
Number of Residues4
Detailsbinding site for residue FMT B 305
ChainResidue
BILE261
BLEU290
BHOH503
BHOH571

site_idAE7
Number of Residues5
Detailsbinding site for residue FMT B 306
ChainResidue
BMET188
BLYS189
BVAL190
BFMT307
BHOH443

site_idAE8
Number of Residues5
Detailsbinding site for residue FMT B 307
ChainResidue
BLYS189
BVAL190
BTYR191
BGLU195
BFMT306

site_idAE9
Number of Residues7
Detailsbinding site for residue URE B 308
ChainResidue
BALA31
BARG36
BLYS281
BGLU285
BHOH413
BHOH414
BHOH439

site_idAF1
Number of Residues1
Detailsbinding site for residue URE B 309
ChainResidue
BGLU156

site_idAF2
Number of Residues2
Detailsbinding site for residue URE B 310
ChainResidue
BGLU129
BHOH451

site_idAF3
Number of Residues5
Detailsbinding site for residue EDO B 311
ChainResidue
BGLY146
BILE147
BGLY148
BGLU150
BPEG318

site_idAF4
Number of Residues5
Detailsbinding site for residue EDO B 312
ChainResidue
BTYR245
BHOH477
EARG173
EVAL240
EEDO311

site_idAF5
Number of Residues10
Detailsbinding site for residue SO4 B 313
ChainResidue
BARG19
BASP120
BHIS122
BASP124
BHIS137
BASP223
BASP225
BGLU268
BMG303
BMG304

site_idAF6
Number of Residues6
Detailsbinding site for residue SO4 B 314
ChainResidue
BASP13
BLEU14
BGLY15
BARG18
BASN65
BHOH406

site_idAF7
Number of Residues7
Detailsbinding site for residue SO4 B 315
ChainResidue
BLYS87
BHIS110
BTYR111
BHOH422
BHOH476
BHOH520
BHOH586

site_idAF8
Number of Residues6
Detailsbinding site for residue SO4 B 316
ChainResidue
BLEU125
BTHR127
BILE147
BGLY178
BTYR182
BHOH509

site_idAF9
Number of Residues3
Detailsbinding site for residue PEG B 317
ChainResidue
BSER186
BHOH471
BHOH518

site_idAG1
Number of Residues5
Detailsbinding site for residue PEG B 318
ChainResidue
BLEU145
BGLY146
BVAL153
BPRO160
BEDO311

site_idAG2
Number of Residues5
Detailsbinding site for residue CL C 301
ChainResidue
CLEU128
CGLU129
CHIS149
CURE310
CHOH555

site_idAG3
Number of Residues3
Detailsbinding site for residue CL C 302
ChainResidue
CARG54
CGLU55
CGOA316

site_idAG4
Number of Residues1
Detailsbinding site for residue CL C 303
ChainResidue
CALA31

site_idAG5
Number of Residues6
Detailsbinding site for residue MG C 304
ChainResidue
CASP120
CHIS122
CASP223
CASP225
CMG305
CSO4318

site_idAG6
Number of Residues6
Detailsbinding site for residue MG C 305
ChainResidue
CHIS97
CASP120
CASP124
CASP223
CMG304
CSO4318

site_idAG7
Number of Residues5
Detailsbinding site for residue URE C 306
ChainResidue
CTYR245
CHIS249
CGLU285
CEDO314
DVAL240

site_idAG8
Number of Residues2
Detailsbinding site for residue URE C 307
ChainResidue
CGLU285
CGLU288

site_idAG9
Number of Residues3
Detailsbinding site for residue URE C 308
ChainResidue
CLYS189
CTYR211
CHOH492

site_idAH1
Number of Residues5
Detailsbinding site for residue URE C 309
ChainResidue
CLYS189
CVAL190
CGLU195
CHOH432
CHOH515

site_idAH2
Number of Residues4
Detailsbinding site for residue URE C 310
ChainResidue
CGLU129
CGLY148
CCL301
CHOH491

site_idAH3
Number of Residues4
Detailsbinding site for residue URE C 311
ChainResidue
CGLU45
CLYS82
CGLU86
CLYS88

site_idAH4
Number of Residues6
Detailsbinding site for residue EDO C 312
ChainResidue
CTYR256
CILE261
CLEU290
CLEU291
CHOH451
CHOH501

site_idAH5
Number of Residues7
Detailsbinding site for residue EDO C 313
ChainResidue
CMET193
CASP197
CGLY241
CSO4317
CHOH438
FARG246
FHIS249

site_idAH6
Number of Residues7
Detailsbinding site for residue EDO C 314
ChainResidue
CTYR245
CARG246
CHIS249
CURE306
DMET193
DASP197
DGLY241

site_idAH7
Number of Residues6
Detailsbinding site for residue GOA C 315
ChainResidue
BARG29
BILE34
BHOH409
CARG18
CHOH430
CHOH449

site_idAH8
Number of Residues6
Detailsbinding site for residue GOA C 316
ChainResidue
CASP13
CLEU14
CGLY15
CASN65
CCL302
CHOH519

site_idAH9
Number of Residues7
Detailsbinding site for residue SO4 C 317
ChainResidue
CARG173
CVAL240
CEDO313
FTYR245
FHIS249
FGLU285
FLEU295

site_idAI1
Number of Residues10
Detailsbinding site for residue SO4 C 318
ChainResidue
CARG19
CASP120
CHIS122
CASP124
CHIS137
CASP223
CASP225
CGLU268
CMG304
CMG305

site_idAI2
Number of Residues4
Detailsbinding site for residue SO4 C 319
ChainResidue
CLEU125
CTHR127
CGLY178
CTYR182

site_idAI3
Number of Residues4
Detailsbinding site for residue CL D 301
ChainResidue
DLEU128
DHIS149
DHOH531
DHOH566

site_idAI4
Number of Residues6
Detailsbinding site for residue MG D 302
ChainResidue
DASP120
DHIS122
DASP223
DASP225
DMG303
DSO4310

site_idAI5
Number of Residues6
Detailsbinding site for residue MG D 303
ChainResidue
DHIS97
DASP120
DASP124
DASP223
DMG302
DSO4310

site_idAI6
Number of Residues2
Detailsbinding site for residue FMT D 304
ChainResidue
DLEU290
DHOH494

site_idAI7
Number of Residues6
Detailsbinding site for residue FMT D 305
ChainResidue
DASN126
DSER174
DASP176
DGLU179
DHOH456
DHOH573

site_idAI8
Number of Residues6
Detailsbinding site for residue FMT D 306
ChainResidue
DMET188
DLYS189
DVAL190
DFMT307
DHOH438
DHOH515

site_idAI9
Number of Residues4
Detailsbinding site for residue FMT D 307
ChainResidue
DVAL190
DTYR191
DGLU207
DFMT306

site_idAJ1
Number of Residues4
Detailsbinding site for residue EDO D 308
ChainResidue
DGLY146
DILE147
DGLY148
DGLU150

site_idAJ2
Number of Residues8
Detailsbinding site for residue GOA D 309
ChainResidue
DTYR245
DHIS249
DGLU285
DLEU295
DHOH548
FARG173
FVAL240
FEDO307

site_idAJ3
Number of Residues10
Detailsbinding site for residue SO4 D 310
ChainResidue
DHIS97
DASP120
DHIS122
DASP124
DHIS137
DASP223
DASP225
DGLU268
DMG302
DMG303

site_idAJ4
Number of Residues6
Detailsbinding site for residue SO4 D 311
ChainResidue
DLYS87
DHIS110
DTYR111
DHOH436
DHOH441
DHOH442

site_idAJ5
Number of Residues5
Detailsbinding site for residue SO4 D 312
ChainResidue
DASP13
DLEU14
DGLY15
DARG18
DASN65

site_idAJ6
Number of Residues4
Detailsbinding site for residue SO4 D 313
ChainResidue
DLEU125
DTHR127
DGLY178
DTYR182

site_idAJ7
Number of Residues2
Detailsbinding site for residue CL E 301
ChainResidue
AVAL240
ETYR245

site_idAJ8
Number of Residues6
Detailsbinding site for residue NA E 302
ChainResidue
EASP274
EHOH520
EHOH591
FASP274
FHOH411
FHOH514

site_idAJ9
Number of Residues6
Detailsbinding site for residue MG E 303
ChainResidue
EASP120
EHIS122
EASP223
EASP225
EMG304
ESO4312

site_idAK1
Number of Residues6
Detailsbinding site for residue MG E 304
ChainResidue
EHIS97
EASP120
EASP124
EASP223
EMG303
ESO4312

site_idAK2
Number of Residues4
Detailsbinding site for residue FMT E 305
ChainResidue
EILE261
ELEU290
ELEU291
EHOH452

site_idAK3
Number of Residues6
Detailsbinding site for residue FMT E 306
ChainResidue
EMET188
ELYS189
EVAL190
EURE310
EHOH421
EHOH522

site_idAK4
Number of Residues6
Detailsbinding site for residue FMT E 307
ChainResidue
EALA108
ETYR111
EASP112
ELEU114
ELYS161
ELYS163

site_idAK5
Number of Residues4
Detailsbinding site for residue FMT E 308
ChainResidue
EGLY146
EILE147
EGLY148
EGLU150

site_idAK6
Number of Residues5
Detailsbinding site for residue URE E 309
ChainResidue
EALA31
EARG36
ELYS281
EGLU285
EHOH419

site_idAK7
Number of Residues5
Detailsbinding site for residue URE E 310
ChainResidue
ELYS189
EVAL190
EGLU195
EFMT306
EHOH470

site_idAK8
Number of Residues7
Detailsbinding site for residue EDO E 311
ChainResidue
BARG246
BHIS249
BEDO312
BHOH445
EMET193
EASP197
EGLY241

site_idAK9
Number of Residues10
Detailsbinding site for residue SO4 E 312
ChainResidue
EARG19
EHIS97
EHIS122
EASP124
EHIS137
EASP223
EASP225
EGLU268
EMG303
EMG304

site_idAL1
Number of Residues6
Detailsbinding site for residue SO4 E 313
ChainResidue
ELEU125
ETHR127
EILE147
EGLY178
ETYR182
EHOH445

site_idAL2
Number of Residues4
Detailsbinding site for residue SO4 E 314
ChainResidue
EMET40
EGLY41
ETYR42
EHOH414

site_idAL3
Number of Residues6
Detailsbinding site for residue MG F 301
ChainResidue
FASP120
FHIS122
FASP223
FASP225
FMG302
FSO4310

site_idAL4
Number of Residues6
Detailsbinding site for residue MG F 302
ChainResidue
FHIS97
FASP120
FASP124
FASP223
FMG301
FSO4310

site_idAL5
Number of Residues3
Detailsbinding site for residue FMT F 303
ChainResidue
FALA31
FARG36
FGLU285

site_idAL6
Number of Residues4
Detailsbinding site for residue FMT F 304
ChainResidue
FGLU165
FHOH460
FHOH485
FHOH563

site_idAL7
Number of Residues1
Detailsbinding site for residue URE F 305
ChainResidue
FASP112

site_idAL8
Number of Residues4
Detailsbinding site for residue URE F 306
ChainResidue
EILE272
FTYR30
FHOH464
FHOH466

site_idAL9
Number of Residues7
Detailsbinding site for residue EDO F 307
ChainResidue
DARG246
DHIS249
DGOA309
DHOH427
FMET193
FASP197
FGLY241

site_idAM1
Number of Residues3
Detailsbinding site for residue EDO F 308
ChainResidue
FGLY146
FILE147
FGLY148

site_idAM2
Number of Residues6
Detailsbinding site for residue GOA F 309
ChainResidue
FTYR256
FILE261
FLEU290
FLEU291
FHOH434
FHOH471

site_idAM3
Number of Residues10
Detailsbinding site for residue SO4 F 310
ChainResidue
FARG19
FHIS122
FASP124
FHIS137
FASP223
FASP225
FTHR237
FGLU268
FMG301
FMG302

site_idAM4
Number of Residues5
Detailsbinding site for residue SO4 F 311
ChainResidue
FLEU125
FTHR127
FILE147
FTYR182
FHOH497

Functional Information from PROSITE/UniProt
site_idPS01053
Number of Residues22
DetailsARGINASE_1 Arginase family signature. SLDLDgldPndaPGvgtpvvgG
ChainResidueDetails
ASER221-GLY242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00742","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues54
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P53608","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

244349

PDB entries from 2025-11-05

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