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6NFP

1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168

Functional Information from GO Data
ChainGOidnamespacecontents
A0000050biological_processurea cycle
A0004053molecular_functionarginase activity
A0005737cellular_componentcytoplasm
A0006525biological_processarginine metabolic process
A0016787molecular_functionhydrolase activity
A0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
A0019547biological_processarginine catabolic process to ornithine
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
B0000050biological_processurea cycle
B0004053molecular_functionarginase activity
B0005737cellular_componentcytoplasm
B0006525biological_processarginine metabolic process
B0016787molecular_functionhydrolase activity
B0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
B0019547biological_processarginine catabolic process to ornithine
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
C0000050biological_processurea cycle
C0004053molecular_functionarginase activity
C0005737cellular_componentcytoplasm
C0006525biological_processarginine metabolic process
C0016787molecular_functionhydrolase activity
C0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
C0019547biological_processarginine catabolic process to ornithine
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
D0000050biological_processurea cycle
D0004053molecular_functionarginase activity
D0005737cellular_componentcytoplasm
D0006525biological_processarginine metabolic process
D0016787molecular_functionhydrolase activity
D0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
D0019547biological_processarginine catabolic process to ornithine
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
E0000050biological_processurea cycle
E0004053molecular_functionarginase activity
E0005737cellular_componentcytoplasm
E0006525biological_processarginine metabolic process
E0016787molecular_functionhydrolase activity
E0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
E0019547biological_processarginine catabolic process to ornithine
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
F0000050biological_processurea cycle
F0004053molecular_functionarginase activity
F0005737cellular_componentcytoplasm
F0006525biological_processarginine metabolic process
F0016787molecular_functionhydrolase activity
F0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
F0019547biological_processarginine catabolic process to ornithine
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 301
ChainResidue
ALEU128
AHIS149
AHOH565

site_idAC2
Number of Residues4
Detailsbinding site for residue CL A 302
ChainResidue
APRO11
AMET12
AASP13
AHOH558

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 303
ChainResidue
ALYS189
AVAL190

site_idAC4
Number of Residues1
Detailsbinding site for residue CL A 304
ChainResidue
AALA31

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 305
ChainResidue
AASP274
AHOH411
AHOH467
DASP274
DHOH518
DHOH558

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 306
ChainResidue
AASP120
AHIS122
AASP223
AASP225
AMG307
ASO4318

site_idAC7
Number of Residues6
Detailsbinding site for residue MG A 307
ChainResidue
AHIS97
AASP120
AASP124
AASP223
AMG306
ASO4318

site_idAC8
Number of Residues3
Detailsbinding site for residue FMT A 308
ChainResidue
ALEU290
ALEU291
AHOH518

site_idAC9
Number of Residues6
Detailsbinding site for residue FMT A 309
ChainResidue
AALA108
ATYR111
AASP112
AASN113
ALEU114
ALYS161

site_idAD1
Number of Residues1
Detailsbinding site for residue URE A 310
ChainResidue
ALEU125

site_idAD2
Number of Residues3
Detailsbinding site for residue URE A 311
ChainResidue
ALEU209
AASP210
ASER213

site_idAD3
Number of Residues5
Detailsbinding site for residue URE A 312
ChainResidue
ATYR245
AGLU285
AHOH403
BARG173
BVAL240

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 313
ChainResidue
ALYS278
ATHR282
BVAL240

site_idAD5
Number of Residues3
Detailsbinding site for residue EDO A 314
ChainResidue
APRO229
APRO238
AHOH580

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO A 315
ChainResidue
ASER38
AGLY41
ATYR42

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO A 316
ChainResidue
ASER26
AARG29
AHOH402
AHOH590
DASP22

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO A 317
ChainResidue
AMET40
ALEU291
AGLY292
AHOH426

site_idAD9
Number of Residues11
Detailsbinding site for residue SO4 A 318
ChainResidue
AARG19
AASP120
AHIS122
AASP124
AHIS137
AASP223
AASP225
ATHR237
AGLU268
AMG306
AMG307

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 A 319
ChainResidue
AASP210
ATYR211
ASER213
AALA214
AHOH401

site_idAE2
Number of Residues3
Detailsbinding site for residue CL B 301
ChainResidue
BLEU128
BHIS149
BHOH599

site_idAE3
Number of Residues6
Detailsbinding site for residue NA B 302
ChainResidue
BASP274
BHOH530
CASP274
CHOH417
CHOH471
CHOH614

site_idAE4
Number of Residues6
Detailsbinding site for residue MG B 303
ChainResidue
BASP120
BHIS122
BASP223
BASP225
BMG304
BSO4313

site_idAE5
Number of Residues6
Detailsbinding site for residue MG B 304
ChainResidue
BMG303
BSO4313
BHIS97
BASP120
BASP124
BASP223

site_idAE6
Number of Residues4
Detailsbinding site for residue FMT B 305
ChainResidue
BILE261
BLEU290
BHOH503
BHOH571

site_idAE7
Number of Residues5
Detailsbinding site for residue FMT B 306
ChainResidue
BMET188
BLYS189
BVAL190
BFMT307
BHOH443

site_idAE8
Number of Residues5
Detailsbinding site for residue FMT B 307
ChainResidue
BLYS189
BVAL190
BTYR191
BGLU195
BFMT306

site_idAE9
Number of Residues7
Detailsbinding site for residue URE B 308
ChainResidue
BALA31
BARG36
BLYS281
BGLU285
BHOH413
BHOH414
BHOH439

site_idAF1
Number of Residues1
Detailsbinding site for residue URE B 309
ChainResidue
BGLU156

site_idAF2
Number of Residues2
Detailsbinding site for residue URE B 310
ChainResidue
BGLU129
BHOH451

site_idAF3
Number of Residues5
Detailsbinding site for residue EDO B 311
ChainResidue
BGLY146
BILE147
BGLY148
BGLU150
BPEG318

site_idAF4
Number of Residues5
Detailsbinding site for residue EDO B 312
ChainResidue
BTYR245
BHOH477
EARG173
EVAL240
EEDO311

site_idAF5
Number of Residues10
Detailsbinding site for residue SO4 B 313
ChainResidue
BARG19
BASP120
BHIS122
BASP124
BHIS137
BASP223
BASP225
BGLU268
BMG303
BMG304

site_idAF6
Number of Residues6
Detailsbinding site for residue SO4 B 314
ChainResidue
BASP13
BLEU14
BGLY15
BARG18
BASN65
BHOH406

site_idAF7
Number of Residues7
Detailsbinding site for residue SO4 B 315
ChainResidue
BLYS87
BHIS110
BTYR111
BHOH422
BHOH476
BHOH520
BHOH586

site_idAF8
Number of Residues6
Detailsbinding site for residue SO4 B 316
ChainResidue
BLEU125
BTHR127
BILE147
BGLY178
BTYR182
BHOH509

site_idAF9
Number of Residues3
Detailsbinding site for residue PEG B 317
ChainResidue
BSER186
BHOH471
BHOH518

site_idAG1
Number of Residues5
Detailsbinding site for residue PEG B 318
ChainResidue
BLEU145
BGLY146
BVAL153
BPRO160
BEDO311

site_idAG2
Number of Residues5
Detailsbinding site for residue CL C 301
ChainResidue
CLEU128
CGLU129
CHIS149
CURE310
CHOH555

site_idAG3
Number of Residues3
Detailsbinding site for residue CL C 302
ChainResidue
CARG54
CGLU55
CGOA316

site_idAG4
Number of Residues1
Detailsbinding site for residue CL C 303
ChainResidue
CALA31

site_idAG5
Number of Residues6
Detailsbinding site for residue MG C 304
ChainResidue
CASP120
CHIS122
CASP223
CASP225
CMG305
CSO4318

site_idAG6
Number of Residues6
Detailsbinding site for residue MG C 305
ChainResidue
CHIS97
CASP120
CASP124
CASP223
CMG304
CSO4318

site_idAG7
Number of Residues5
Detailsbinding site for residue URE C 306
ChainResidue
CTYR245
CHIS249
CGLU285
CEDO314
DVAL240

site_idAG8
Number of Residues2
Detailsbinding site for residue URE C 307
ChainResidue
CGLU285
CGLU288

site_idAG9
Number of Residues3
Detailsbinding site for residue URE C 308
ChainResidue
CLYS189
CTYR211
CHOH492

site_idAH1
Number of Residues5
Detailsbinding site for residue URE C 309
ChainResidue
CLYS189
CVAL190
CGLU195
CHOH432
CHOH515

site_idAH2
Number of Residues4
Detailsbinding site for residue URE C 310
ChainResidue
CGLU129
CGLY148
CCL301
CHOH491

site_idAH3
Number of Residues4
Detailsbinding site for residue URE C 311
ChainResidue
CGLU45
CLYS82
CGLU86
CLYS88

site_idAH4
Number of Residues6
Detailsbinding site for residue EDO C 312
ChainResidue
CTYR256
CILE261
CLEU290
CLEU291
CHOH451
CHOH501

site_idAH5
Number of Residues7
Detailsbinding site for residue EDO C 313
ChainResidue
CMET193
CASP197
CGLY241
CSO4317
CHOH438
FARG246
FHIS249

site_idAH6
Number of Residues7
Detailsbinding site for residue EDO C 314
ChainResidue
CTYR245
CARG246
CHIS249
CURE306
DMET193
DASP197
DGLY241

site_idAH7
Number of Residues6
Detailsbinding site for residue GOA C 315
ChainResidue
BARG29
BILE34
BHOH409
CARG18
CHOH430
CHOH449

site_idAH8
Number of Residues6
Detailsbinding site for residue GOA C 316
ChainResidue
CASP13
CLEU14
CGLY15
CASN65
CCL302
CHOH519

site_idAH9
Number of Residues7
Detailsbinding site for residue SO4 C 317
ChainResidue
CARG173
CVAL240
CEDO313
FTYR245
FHIS249
FGLU285
FLEU295

site_idAI1
Number of Residues10
Detailsbinding site for residue SO4 C 318
ChainResidue
CARG19
CASP120
CHIS122
CASP124
CHIS137
CASP223
CASP225
CGLU268
CMG304
CMG305

site_idAI2
Number of Residues4
Detailsbinding site for residue SO4 C 319
ChainResidue
CLEU125
CTHR127
CGLY178
CTYR182

site_idAI3
Number of Residues4
Detailsbinding site for residue CL D 301
ChainResidue
DLEU128
DHIS149
DHOH531
DHOH566

site_idAI4
Number of Residues6
Detailsbinding site for residue MG D 302
ChainResidue
DASP120
DHIS122
DASP223
DASP225
DMG303
DSO4310

site_idAI5
Number of Residues6
Detailsbinding site for residue MG D 303
ChainResidue
DHIS97
DASP120
DASP124
DASP223
DMG302
DSO4310

site_idAI6
Number of Residues2
Detailsbinding site for residue FMT D 304
ChainResidue
DLEU290
DHOH494

site_idAI7
Number of Residues6
Detailsbinding site for residue FMT D 305
ChainResidue
DASN126
DSER174
DASP176
DGLU179
DHOH456
DHOH573

site_idAI8
Number of Residues6
Detailsbinding site for residue FMT D 306
ChainResidue
DMET188
DLYS189
DVAL190
DFMT307
DHOH438
DHOH515

site_idAI9
Number of Residues4
Detailsbinding site for residue FMT D 307
ChainResidue
DVAL190
DTYR191
DGLU207
DFMT306

site_idAJ1
Number of Residues4
Detailsbinding site for residue EDO D 308
ChainResidue
DGLY146
DILE147
DGLY148
DGLU150

site_idAJ2
Number of Residues8
Detailsbinding site for residue GOA D 309
ChainResidue
DTYR245
DHIS249
DGLU285
DLEU295
DHOH548
FARG173
FVAL240
FEDO307

site_idAJ3
Number of Residues10
Detailsbinding site for residue SO4 D 310
ChainResidue
DHIS97
DASP120
DHIS122
DASP124
DHIS137
DASP223
DASP225
DGLU268
DMG302
DMG303

site_idAJ4
Number of Residues6
Detailsbinding site for residue SO4 D 311
ChainResidue
DLYS87
DHIS110
DTYR111
DHOH436
DHOH441
DHOH442

site_idAJ5
Number of Residues5
Detailsbinding site for residue SO4 D 312
ChainResidue
DASP13
DLEU14
DGLY15
DARG18
DASN65

site_idAJ6
Number of Residues4
Detailsbinding site for residue SO4 D 313
ChainResidue
DLEU125
DTHR127
DGLY178
DTYR182

site_idAJ7
Number of Residues2
Detailsbinding site for residue CL E 301
ChainResidue
AVAL240
ETYR245

site_idAJ8
Number of Residues6
Detailsbinding site for residue NA E 302
ChainResidue
EASP274
EHOH520
EHOH591
FASP274
FHOH411
FHOH514

site_idAJ9
Number of Residues6
Detailsbinding site for residue MG E 303
ChainResidue
EASP120
EHIS122
EASP223
EASP225
EMG304
ESO4312

site_idAK1
Number of Residues6
Detailsbinding site for residue MG E 304
ChainResidue
EHIS97
EASP120
EASP124
EASP223
EMG303
ESO4312

site_idAK2
Number of Residues4
Detailsbinding site for residue FMT E 305
ChainResidue
EILE261
ELEU290
ELEU291
EHOH452

site_idAK3
Number of Residues6
Detailsbinding site for residue FMT E 306
ChainResidue
EMET188
ELYS189
EVAL190
EURE310
EHOH421
EHOH522

site_idAK4
Number of Residues6
Detailsbinding site for residue FMT E 307
ChainResidue
EALA108
ETYR111
EASP112
ELEU114
ELYS161
ELYS163

site_idAK5
Number of Residues4
Detailsbinding site for residue FMT E 308
ChainResidue
EGLY146
EILE147
EGLY148
EGLU150

site_idAK6
Number of Residues5
Detailsbinding site for residue URE E 309
ChainResidue
EALA31
EARG36
ELYS281
EGLU285
EHOH419

site_idAK7
Number of Residues5
Detailsbinding site for residue URE E 310
ChainResidue
ELYS189
EVAL190
EGLU195
EFMT306
EHOH470

site_idAK8
Number of Residues7
Detailsbinding site for residue EDO E 311
ChainResidue
BARG246
BHIS249
BEDO312
BHOH445
EMET193
EASP197
EGLY241

site_idAK9
Number of Residues10
Detailsbinding site for residue SO4 E 312
ChainResidue
EARG19
EHIS97
EHIS122
EASP124
EHIS137
EASP223
EASP225
EGLU268
EMG303
EMG304

site_idAL1
Number of Residues6
Detailsbinding site for residue SO4 E 313
ChainResidue
ELEU125
ETHR127
EILE147
EGLY178
ETYR182
EHOH445

site_idAL2
Number of Residues4
Detailsbinding site for residue SO4 E 314
ChainResidue
EMET40
EGLY41
ETYR42
EHOH414

site_idAL3
Number of Residues6
Detailsbinding site for residue MG F 301
ChainResidue
FASP120
FHIS122
FASP223
FASP225
FMG302
FSO4310

site_idAL4
Number of Residues6
Detailsbinding site for residue MG F 302
ChainResidue
FHIS97
FASP120
FASP124
FASP223
FMG301
FSO4310

site_idAL5
Number of Residues3
Detailsbinding site for residue FMT F 303
ChainResidue
FALA31
FARG36
FGLU285

site_idAL6
Number of Residues4
Detailsbinding site for residue FMT F 304
ChainResidue
FGLU165
FHOH460
FHOH485
FHOH563

site_idAL7
Number of Residues1
Detailsbinding site for residue URE F 305
ChainResidue
FASP112

site_idAL8
Number of Residues4
Detailsbinding site for residue URE F 306
ChainResidue
EILE272
FTYR30
FHOH464
FHOH466

site_idAL9
Number of Residues7
Detailsbinding site for residue EDO F 307
ChainResidue
DARG246
DHIS249
DGOA309
DHOH427
FMET193
FASP197
FGLY241

site_idAM1
Number of Residues3
Detailsbinding site for residue EDO F 308
ChainResidue
FGLY146
FILE147
FGLY148

site_idAM2
Number of Residues6
Detailsbinding site for residue GOA F 309
ChainResidue
FTYR256
FILE261
FLEU290
FLEU291
FHOH434
FHOH471

site_idAM3
Number of Residues10
Detailsbinding site for residue SO4 F 310
ChainResidue
FARG19
FHIS122
FASP124
FHIS137
FASP223
FASP225
FTHR237
FGLU268
FMG301
FMG302

site_idAM4
Number of Residues5
Detailsbinding site for residue SO4 F 311
ChainResidue
FLEU125
FTHR127
FILE147
FTYR182
FHOH497

Functional Information from PROSITE/UniProt
site_idPS01053
Number of Residues22
DetailsARGINASE_1 Arginase family signature. SLDLDgldPndaPGvgtpvvgG
ChainResidueDetails
ASER221-GLY242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00742
ChainResidueDetails
CHIS97
CASP120
CHIS122
CASP124
CASP223
CASP225
DHIS97
DASP120
DHIS122
DASP124
DASP223
DASP225
EHIS97
EASP120
EHIS122
EASP124
EASP223
EASP225
FHIS97
FASP120
FHIS122
FASP124
FASP223
FASP225
AASP225
BHIS97
BASP120
BHIS122
BASP124
BASP223
BASP225
AHIS97
AASP120
AHIS122
AASP124
AASP223

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P53608
ChainResidueDetails
ATHR237
AGLU268
BSER133
BASP176
BTHR237
BGLU268
CSER133
CASP176
CTHR237
CGLU268
DSER133
DASP176
DTHR237
DGLU268
ESER133
EASP176
ETHR237
EGLU268
FSER133
FASP176
FTHR237
FGLU268
ASER133
AASP176

221051

PDB entries from 2024-06-12

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