6NEC
STRUCTURE OF RET PROTEIN TYROSINE KINASE DOMAIN IN COMPLEX WITH NINTEDANIB
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004672 | molecular_function | protein kinase activity |
| A | 0004713 | molecular_function | protein tyrosine kinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006468 | biological_process | protein phosphorylation |
| C | 0004672 | molecular_function | protein kinase activity |
| C | 0004713 | molecular_function | protein tyrosine kinase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0006468 | biological_process | protein phosphorylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue XIN A 1101 |
| Chain | Residue |
| A | GLY731 |
| A | ALA807 |
| A | LYS808 |
| A | GLY810 |
| A | LEU881 |
| A | ASP892 |
| A | ALA756 |
| A | LYS758 |
| A | GLU775 |
| A | LEU779 |
| A | ILE788 |
| A | VAL804 |
| A | GLU805 |
| A | TYR806 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue FMT A 1102 |
| Chain | Residue |
| A | ARG873 |
| A | LEU895 |
| A | ARG897 |
| A | LYS907 |
| A | GLY911 |
| A | ARG912 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue FMT C 1101 |
| Chain | Residue |
| A | GLN910 |
| A | LEU923 |
| A | PHE924 |
| A | HIS926 |
| C | GLY700 |
| C | PRO701 |
| C | LEU702 |
| C | SER703 |
| site_id | AC4 |
| Number of Residues | 19 |
| Details | binding site for residue XIN C 1102 |
| Chain | Residue |
| C | THR729 |
| C | LEU730 |
| C | GLY731 |
| C | VAL738 |
| C | ALA756 |
| C | LYS758 |
| C | GLU775 |
| C | LEU779 |
| C | ILE788 |
| C | VAL804 |
| C | GLU805 |
| C | TYR806 |
| C | ALA807 |
| C | LYS808 |
| C | TYR809 |
| C | GLY810 |
| C | LEU881 |
| C | SER891 |
| C | ASP892 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 29 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGEFGKVVkAtafhlkgragytt.....VAVK |
| Chain | Residue | Details |
| A | LEU730-LYS758 |
| site_id | PS00109 |
| Number of Residues | 13 |
| Details | PROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. LVHrDLAARNILV |
| Chain | Residue | Details |
| A | LEU870-VAL882 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10028 |
| Chain | Residue | Details |
| A | ASP874 | |
| C | ASP874 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000305|PubMed:24560924, ECO:0007744|PDB:4CKI |
| Chain | Residue | Details |
| A | LEU730 | |
| C | LEU730 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000305|PubMed:24560924 |
| Chain | Residue | Details |
| A | LYS758 | |
| C | LYS758 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:20117004, ECO:0007744|PDB:2X2M |
| Chain | Residue | Details |
| A | GLU805 | |
| C | GLU805 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | SITE: Cleavage; by caspase-3 => ECO:0000269|PubMed:21357690 |
| Chain | Residue | Details |
| A | ASP707 | |
| C | ASP707 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | SITE: Breakpoint for translocation to form PCM1-RET; RET-CCDC6; RET-GOLGA5; RET-TRIM24 and RET-TRIM33 oncogenes => ECO:0000269|PubMed:10439047, ECO:0000269|PubMed:10980597, ECO:0000269|PubMed:2406025, ECO:0000269|PubMed:2734021 |
| Chain | Residue | Details |
| A | LEU712 | |
| C | LEU712 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphotyrosine; by autocatalysis => ECO:0000269|PubMed:14711813 |
| Chain | Residue | Details |
| A | TYR806 | |
| A | TYR809 | |
| C | TYR806 | |
| C | TYR809 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphotyrosine; by autocatalysis => ECO:0000269|PubMed:24560924 |
| Chain | Residue | Details |
| A | TYR826 | |
| C | TYR826 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphotyrosine; by autocatalysis => ECO:0000269|PubMed:14711813, ECO:0000269|PubMed:16928683, ECO:0000269|PubMed:24560924 |
| Chain | Residue | Details |
| A | TYR900 | |
| C | TYR900 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphotyrosine; by autocatalysis => ECO:0000269|PubMed:14711813, ECO:0000269|PubMed:16928683, ECO:0000269|PubMed:20117004, ECO:0000269|PubMed:24560924, ECO:0000269|PubMed:28846099 |
| Chain | Residue | Details |
| A | TYR905 | |
| C | TYR905 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphotyrosine; by autocatalysis => ECO:0000269|PubMed:14711813, ECO:0000269|PubMed:24560924 |
| Chain | Residue | Details |
| A | TYR981 | |
| C | TYR981 |
