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6N2A

Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008836molecular_functiondiaminopimelate decarboxylase activity
A0009089biological_processlysine biosynthetic process via diaminopimelate
B0003824molecular_functioncatalytic activity
B0008836molecular_functiondiaminopimelate decarboxylase activity
B0009089biological_processlysine biosynthetic process via diaminopimelate
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for Di-peptide PLP A 501 and LYS A 502
ChainResidue
ALYS77
ATYR335
ATYR392
AHOH620
AHOH632
AHOH671
AHOH719
AHOH744
BCYS363
BGLU364
BTYR400
AHIS216
ASER219
AGLY256
AGLU292
APRO293
AGLY294
AARG295
AARG331

site_idAC2
Number of Residues19
Detailsbinding site for Di-peptide PLP B 501 and LYS B 502
ChainResidue
ACYS363
AGLU364
ATYR400
BALA75
BLYS77
BHIS216
BSER219
BGLY256
BGLU292
BPRO293
BGLY294
BARG295
BARG331
BTYR335
BTYR392
BHOH648
BHOH664
BHOH671
BHOH808

Functional Information from PROSITE/UniProt
site_idPS00878
Number of Residues19
DetailsODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAiKANnnlkILehLrslG
ChainResidueDetails
ATYR74-GLY92

site_idPS00879
Number of Residues14
DetailsODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Gfe....VsYLNIGGGLG
ChainResidueDetails
AGLY245-GLY258

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255
ChainResidueDetails
ACYS363
BCYS363

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY256
BARG295
BARG331
BTYR335
BGLU364
BTYR392
AGLU292
AARG295
AARG331
ATYR335
AGLU364
ATYR392
BGLY256
BGLU292

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS77
BLYS77

224201

PDB entries from 2024-08-28

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