Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0004518 | molecular_function | nuclease activity |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0006281 | biological_process | DNA repair |
A | 0006302 | biological_process | double-strand break repair |
A | 0006974 | biological_process | DNA damage response |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0071897 | biological_process | DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue MPD A 901 |
Chain | Residue |
A | TYR714 |
A | GLY715 |
A | ARG789 |
T | GFL4 |
T | UF25 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue MPD A 902 |
Chain | Residue |
A | ARG677 |
A | ALA300 |
A | PHE301 |
A | ARG343 |
A | ARG449 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue MPD A 903 |
Chain | Residue |
A | GLY715 |
A | ILE716 |
A | ILE736 |
A | ARG789 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 904 |
Chain | Residue |
A | ARG702 |
A | LYS706 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 905 |
Chain | Residue |
A | ARG343 |
A | ARG677 |
A | LYS684 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue MG A 906 |
Chain | Residue |
A | GLU658 |
A | ASP830 |
A | HOH1123 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residues GFL T 4 and UF2 T 5 |
Chain | Residue |
A | ILE716 |
A | SER717 |
A | GLY720 |
A | PHE786 |
A | ARG789 |
A | MPD901 |
P | DT11 |
T | A5L6 |
site_id | AC8 |
Number of Residues | 9 |
Details | binding site for residues UF2 T 5 and A5L T 6 |
Chain | Residue |
A | PHE786 |
A | MPD901 |
P | DG9 |
P | DT10 |
P | DT11 |
T | GFL4 |
T | CFL7 |
T | HOH102 |
T | HOH120 |
site_id | AC9 |
Number of Residues | 10 |
Details | binding site for residues A5L T 6 and CFL T 7 |
Chain | Residue |
A | LEU610 |
A | SER617 |
P | DC8 |
P | DG9 |
P | DT10 |
P | DT11 |
T | UF25 |
T | GFL8 |
T | HOH102 |
T | HOH120 |
site_id | AD1 |
Number of Residues | 11 |
Details | binding site for residues CFL T 7 and GFL T 8 |
Chain | Residue |
A | LEU610 |
A | SER617 |
A | THR619 |
P | DA7 |
P | DC8 |
P | DG9 |
P | DT10 |
T | A5L6 |
T | UF29 |
T | HOH103 |
T | HOH105 |
site_id | AD2 |
Number of Residues | 13 |
Details | binding site for residues GFL T 8 and UF2 T 9 |
Chain | Residue |
A | LEU610 |
A | SER617 |
A | THR619 |
A | GLU620 |
P | DA7 |
P | DC8 |
P | DG9 |
T | CFL7 |
T | GFL10 |
T | HOH103 |
T | HOH105 |
T | HOH110 |
T | HOH118 |
site_id | AD3 |
Number of Residues | 19 |
Details | binding site for residues UF2 T 9 and GFL T 10 |
Chain | Residue |
A | SER585 |
A | THR586 |
A | GLY590 |
A | LYS593 |
A | THR619 |
A | GLU620 |
P | DC6 |
P | DA7 |
T | GFL8 |
T | A5L11 |
T | HOH104 |
T | HOH107 |
T | HOH108 |
T | HOH109 |
T | HOH110 |
T | HOH112 |
T | HOH113 |
T | HOH115 |
T | HOH118 |
site_id | AD4 |
Number of Residues | 19 |
Details | binding site for residues GFL T 10 and A5L T 11 |
Chain | Residue |
P | DA7 |
T | UF29 |
T | UF212 |
T | HOH104 |
T | HOH107 |
T | HOH108 |
T | HOH109 |
T | HOH112 |
T | HOH113 |
T | HOH115 |
T | HOH116 |
T | HOH119 |
A | SER585 |
A | THR586 |
A | GLY590 |
A | LYS593 |
P | DA4 |
P | DT5 |
P | DC6 |
site_id | AD5 |
Number of Residues | 12 |
Details | binding site for residues A5L T 11 and UF2 T 12 |
Chain | Residue |
A | ASN527 |
A | ASN529 |
A | SER530 |
A | SER585 |
P | DG3 |
P | DA4 |
P | DT5 |
P | DC6 |
T | GFL10 |
T | CFL13 |
T | HOH116 |
T | HOH119 |
site_id | AD6 |
Number of Residues | 10 |
Details | binding site for residues UF2 T 12 and CFL T 13 |
Chain | Residue |
A | ASN527 |
A | ASN529 |
A | SER530 |
A | GLN533 |
P | DC2 |
P | DG3 |
P | DA4 |
T | A5L11 |
T | GFL14 |
T | HOH111 |
site_id | AD7 |
Number of Residues | 9 |
Details | binding site for residues CFL T 13 and GFL T 14 |
Chain | Residue |
A | SER530 |
A | GLN533 |
P | DG1 |
P | DC2 |
P | DG3 |
P | DA4 |
T | UF212 |
T | CFL15 |
T | HOH111 |
site_id | AD8 |
Number of Residues | 7 |
Details | binding site for residues GFL T 14 and CFL T 15 |
Chain | Residue |
P | DG1 |
P | DC2 |
P | DG3 |
T | CFL13 |
T | A5L16 |
T | HOH117 |
T | HOH123 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residues CFL T 15 and A5L T 16 |
Chain | Residue |
P | DG1 |
T | GFL14 |
T | HOH101 |
T | HOH106 |
T | HOH114 |
T | HOH117 |
T | HOH123 |
Functional Information from PROSITE/UniProt
site_id | PS00447 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL |
Chain | Residue | Details |
A | ARG702-LEU721 | |