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6ML1

Structure of the USP15 deubiquitinase domain in complex with an affinity-matured inhibitory Ubv

Functional Information from GO Data
ChainGOidnamespacecontents
A0004843molecular_functioncysteine-type deubiquitinase activity
A0016579biological_processprotein deubiquitination
B0004843molecular_functioncysteine-type deubiquitinase activity
B0016579biological_processprotein deubiquitination
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 1001
ChainResidue
AASP858
AGLN933
AHOH1134
BASP858
BGLN933
BHOH1137

site_idAC2
Number of Residues4
Detailsbinding site for residue CA A 1002
ChainResidue
GHOH103
ACYS873
AHOH1233
GHIS14

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1003
ChainResidue
ACYS448
ACYS451
ACYS809
ACYS812

site_idAC4
Number of Residues2
Detailsbinding site for residue NA A 1004
ChainResidue
ALEU332
AGLY333

site_idAC5
Number of Residues3
Detailsbinding site for residue NA A 1005
ChainResidue
ALEU788
ALYS789
AHOH1212

site_idAC6
Number of Residues3
Detailsbinding site for residue CA B 1001
ChainResidue
BGLU450
BGLU814
BGLN816

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 1002
ChainResidue
BCYS448
BCYS451
BCYS809
BCYS812

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO B 1003
ChainResidue
BASP860
BGLY872
BCYS873
BSER936

site_idAC9
Number of Residues4
Detailsbinding site for residue CL B 1004
ChainResidue
BASN857
BASN876
BHOH1137
BHOH1162

site_idAD1
Number of Residues3
Detailsbinding site for residue NA B 1005
ChainResidue
BLEU788
BLYS789
BHOH1205

site_idAD2
Number of Residues4
Detailsbinding site for residue NA B 1006
ChainResidue
BPRO467
BLEU468
BLYS836
BSER839

site_idAD3
Number of Residues5
Detailsbinding site for residue CA C 101
ChainResidue
CLYS33
EASP32
EHOH103
EHOH114
EHOH119

site_idAD4
Number of Residues3
Detailsbinding site for residue MES C 102
ChainResidue
CLYS29
CASP32
EASP39

Functional Information from PROSITE/UniProt
site_idPS00972
Number of Residues16
DetailsUSP_1 Ubiquitin specific protease (USP) domain signature 1. GLsnlGNtCFMNSaIQ
ChainResidueDetails
AGLY290-GLN305

site_idPS00973
Number of Residues18
DetailsUSP_2 Ubiquitin specific protease (USP) domain signature 2. YnLiAVsnHyGgmgg..GHY
ChainResidueDetails
ATYR875-TYR892

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10092","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10093","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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