Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MJ5

Crystal structure of Tdp1 catalytic domain in complex with compound XZ519

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0008081molecular_functionphosphoric diester hydrolase activity
B0005634cellular_componentnucleus
B0006281biological_processDNA repair
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue EDO A 701
ChainResidue
AASP322
AASN369
ATRP370
AHOH801
AHOH939

site_idAC2
Number of Residues7
Detailsbinding site for residue EDO A 702
ChainResidue
AALA515
ATRP522
AGLY540
AILE355
AGLY356
ASER357
ATHR513

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 703
ChainResidue
ATHR484
ALYS556
ATYR574
AASP575
ALEU576
AHOH869

site_idAC4
Number of Residues11
Detailsbinding site for residue JTA A 704
ChainResidue
ATYR204
AHIS263
ALYS265
AASN283
AGLY458
APRO461
AHIS493
AHOH899
AHOH942
AHOH973
AHOH1032

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO B 701
ChainResidue
BSER400
BASN516
BSER518

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO B 702
ChainResidue
BILE355
BGLY356
BSER357
BTHR513
BALA515
BTRP522
BGLY540

site_idAC7
Number of Residues8
Detailsbinding site for residue JTA B 703
ChainResidue
BTYR204
BHIS263
BLYS265
BASN283
BGLY458
BPRO461
BHIS493
BHOH827

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:12470949, ECO:0000269|PubMed:15111055
ChainResidueDetails
AHIS263
BHIS263

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000269|PubMed:12470949, ECO:0000269|PubMed:15111055
ChainResidueDetails
AHIS493
BHIS493

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:12470949
ChainResidueDetails
ALYS265
ALYS495
BLYS265
BLYS495

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Interaction with DNA => ECO:0000269|PubMed:12470949
ChainResidueDetails
ASER518
BSER518

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon