Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MDX

Mechanism of protease dependent DPC repair

Functional Information from GO Data
ChainGOidnamespacecontents
A0003697molecular_functionsingle-stranded DNA binding
A0004222molecular_functionmetalloendopeptidase activity
A0006974biological_processDNA damage response
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO A 301
ChainResidue
AARG168
ATYR182
AILE212
AFLC305
AHOH403
AHOH485
AHOH535

site_idAC2
Number of Residues5
Detailsbinding site for residue PGE A 302
ChainResidue
ALEU96
AARG163
AARG163
ATHR73
ATHR73

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 303
ChainResidue
AHIS111
AHIS115
AHIS130
AFLC305

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 304
ChainResidue
ACYS169
ACYS173
AHIS201
ACYS205

site_idAC5
Number of Residues16
Detailsbinding site for residue FLC A 305
ChainResidue
AGLY77
AILE78
AHIS111
AGLU112
AHIS115
AHIS130
AHIS153
ATRP166
ATYR182
AEDO301
AZN303
AHOH417
AHOH427
AHOH436
AHOH472
AHOH535

site_idAC6
Number of Residues22
Detailsbinding site for Di-peptide MLZ A 184 and ARG A 185
ChainResidue
ALEU74
ACYS75
AARG163
AARG164
AHIS165
ATRP166
AVAL183
AALA186
ATHR187
AARG189
AGLU190
APRO191
AASP195
ATYR196
ATRP197
AHOH408
AHOH518
AHOH610
DDC1
DDC2
DHOH101
DHOH102

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. TLLHEMIHAY
ChainResidueDetails
ATHR108-TYR117

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10095","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"27852435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27871365","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27871366","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30893605","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10095","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"30893605","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6MDW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6MDX","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30893605","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6MDW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6MDX","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

244349

PDB entries from 2025-11-05

PDB statisticsPDBj update infoContact PDBjnumon