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6M9K

Crystal structure of lambda exonuclease in complex with the Red beta C-terminal domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0004518molecular_functionnuclease activity
A0004527molecular_functionexonuclease activity
A0006259biological_processDNA metabolic process
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
A0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
B0004518molecular_functionnuclease activity
B0004527molecular_functionexonuclease activity
B0006259biological_processDNA metabolic process
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
B0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
C0004518molecular_functionnuclease activity
C0004527molecular_functionexonuclease activity
C0006259biological_processDNA metabolic process
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
C0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SO4 A 301
ChainResidue
AARG28
AALA34
ASER35
ACYS116
ASER117
AGLN157
AHOH433
AHOH452

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 302
ChainResidue
AARG166
AHOH429
AHOH466
AARG108

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 303
ChainResidue
ALYS151
ASER152
AHOH459
AHOH506

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 304
ChainResidue
ALYS194
ATYR195
ASER198

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 305
ChainResidue
ALYS131
ATYR154

site_idAC6
Number of Residues9
Detailsbinding site for residue SO4 B 301
ChainResidue
BARG28
BTHR33
BALA34
BSER35
BCYS116
BSER117
BGLN157
BHOH428
BHOH464

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 B 302
ChainResidue
BARG108
BARG166
BHOH440

site_idAC8
Number of Residues5
Detailsbinding site for residue SO4 B 303
ChainResidue
BLYS151
BSER152
BHOH443
BHOH458
BHOH485

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 B 304
ChainResidue
BLYS194
BTYR195
BSER198

site_idAD1
Number of Residues9
Detailsbinding site for residue SO4 C 301
ChainResidue
CARG28
CTHR33
CALA34
CSER35
CCYS116
CSER117
CGLN157
CHOH470
CHOH473

site_idAD2
Number of Residues8
Detailsbinding site for residue SO4 C 302
ChainResidue
CARG108
CTRP163
CARG166
CASP200
CHOH459
CHOH463
CHOH487
DGLU237

site_idAD3
Number of Residues3
Detailsbinding site for residue SO4 C 303
ChainResidue
CLYS151
CSER152
CHOH494

site_idAD4
Number of Residues2
Detailsbinding site for residue SO4 C 304
ChainResidue
CTYR195
CSER198

site_idAD5
Number of Residues2
Detailsbinding site for residue SO4 C 305
ChainResidue
CLYS131
CTYR154

site_idAD6
Number of Residues3
Detailsbinding site for residue SO4 C 306
ChainResidue
CARG166
CASN168
DGLU237

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 F 301
ChainResidue
ALYS194
FLYS214
FLYS253

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
AGLU93metal ligand
AGLU102electrostatic stabiliser
AASP109metal ligand
AGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
ALEU130metal ligand
ALYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

site_idMCSA2
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
BGLU93metal ligand
BGLU102electrostatic stabiliser
BASP109metal ligand
BGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
BLEU130metal ligand
BLYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

site_idMCSA3
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
CGLU93metal ligand
CGLU102electrostatic stabiliser
CASP109metal ligand
CGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
CLEU130metal ligand
CLYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

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PDB entries from 2026-01-21

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