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6M72

Crystal structure of Mycobacterium smegmatis MutT1 in complex with 8-oxo-dGDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0044715molecular_function8-oxo-dGDP phosphatase activity
A0044716molecular_function8-oxo-GDP phosphatase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue 8GD A 401
ChainResidue
AARG55
AASP147
AASP148
AHOH525
AHOH528
AHOH571
AHOH600
AHOH633
AHOH637
AHOH684
AHOH738
AARG57
AHOH743
ATYR58
ALYS65
ALYS67
ATYR101
AILE103
ALYS108
ATYR145

site_idAC2
Number of Residues13
Detailsbinding site for residue POP A 402
ChainResidue
AARG169
AHIS170
AARG176
AARG186
AARG218
AGLU242
AGLN271
AGLY272
ALYS297
AHOH574
AHOH598
AHOH638
AHOH667

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 403
ChainResidue
ALYS65
AGLU85
AGLU127
AHOH525
AHOH609
AHOH799

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkldqgEtepvAAaREIhEEtG
ChainResidueDetails
AGLY66-GLY87

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues21
DetailsMotif: {"description":"Nudix box","evidences":[{"source":"PROSITE-ProRule","id":"PRU00794","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28705712","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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