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6M06

Crystal structure of Lp-PLA2 in complex with a novel covalent inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0003847molecular_function1-alkyl-2-acetylglycerophosphocholine esterase activity
B0003847molecular_function1-alkyl-2-acetylglycerophosphocholine esterase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue BWF A 501
ChainResidue
ALEU153
ASER273
APHE274
APHE322
AHIS351
AGLN352

site_idAC2
Number of Residues12
Detailsbinding site for Di-peptide BWF B 501 and SER B 273
ChainResidue
BPHE274
BGLY275
BGLY276
BALA277
BLEU295
BASP296
BTRP298
BPHE322
BHIS351
BPHE110
BLEU153
BHIS272

Functional Information from PROSITE/UniProt
site_idPS00120
Number of Residues10
DetailsLIPASE_SER Lipases, serine active site. IAVIGHSFGG
ChainResidueDetails
AILE267-GLY276

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"18784071","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"Charge relay system","evidences":[{"source":"PROSITE-ProRule","id":"PRU10037","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18784071","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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