6LVS
USP14 catalytic domain mutant C114S
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
A | 0016579 | biological_process | protein deubiquitination |
A | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
B | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
B | 0016579 | biological_process | protein deubiquitination |
B | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
C | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
C | 0016579 | biological_process | protein deubiquitination |
C | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
D | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
D | 0016579 | biological_process | protein deubiquitination |
D | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
E | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
E | 0016579 | biological_process | protein deubiquitination |
E | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
F | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
F | 0016579 | biological_process | protein deubiquitination |
F | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue GOL A 501 |
Chain | Residue |
A | GLY111 |
A | ASN112 |
A | THR113 |
A | TYR115 |
A | LEU176 |
A | HIS180 |
A | PHE186 |
A | TYR195 |
A | LEU196 |
site_id | AC2 |
Number of Residues | 8 |
Details | binding site for residue GOL A 502 |
Chain | Residue |
A | ASN109 |
A | ASN112 |
A | SER114 |
A | GLN197 |
A | HIS435 |
A | HOH610 |
E | LYS189 |
E | GLY193 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue GOL A 503 |
Chain | Residue |
A | MET255 |
A | GLU270 |
A | ILE298 |
A | LYS313 |
C | MET255 |
C | LYS313 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue NA A 504 |
Chain | Residue |
A | PHE247 |
A | LEU273 |
A | TYR323 |
A | LEU324 |
A | THR325 |
A | FMT511 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue NA A 505 |
Chain | Residue |
A | ARG330 |
A | VAL347 |
A | SER467 |
A | ALA475 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue NA A 506 |
Chain | Residue |
A | THR108 |
A | THR113 |
A | ASN117 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue NA A 507 |
Chain | Residue |
A | SER114 |
A | TYR436 |
A | PHE450 |
A | ASP452 |
A | FMT512 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue NA A 508 |
Chain | Residue |
A | HIS426 |
A | SER430 |
A | SER431 |
A | SER433 |
A | TYR436 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue NA A 509 |
Chain | Residue |
A | GLN185 |
A | GLU202 |
A | GLN206 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue NA A 510 |
Chain | Residue |
A | ASN112 |
A | GLN197 |
A | SER433 |
A | GLY434 |
E | GLY190 |
E | GLU191 |
E | GLY193 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue FMT A 511 |
Chain | Residue |
A | TRP204 |
A | MET208 |
A | LEU273 |
A | GLN274 |
A | THR325 |
A | NA504 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue FMT A 512 |
Chain | Residue |
A | ASN117 |
A | ALA118 |
A | GLN121 |
A | SER438 |
A | PHE450 |
A | ASP452 |
A | NA507 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue BME A 513 |
Chain | Residue |
A | ARG330 |
A | PHE331 |
A | LYS342 |
A | HIS426 |
A | ILE474 |
A | ALA475 |
A | TYR476 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue GOL B 501 |
Chain | Residue |
B | GLY111 |
B | ASN112 |
B | THR113 |
B | TYR115 |
B | HIS180 |
B | PHE186 |
B | TYR195 |
B | LEU196 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue GOL B 502 |
Chain | Residue |
B | GLN427 |
B | HIS435 |
B | HIS473 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue GOL B 503 |
Chain | Residue |
B | PHE331 |
B | PHE332 |
B | ASN340 |
B | ALA341 |
B | SER431 |
B | NA509 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue NA B 504 |
Chain | Residue |
B | THR108 |
B | LEU110 |
B | THR113 |
B | ASN117 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue NA B 505 |
Chain | Residue |
B | SER467 |
B | ALA475 |
B | ARG330 |
B | VAL347 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue NA B 506 |
Chain | Residue |
B | SER114 |
B | HIS435 |
B | FMT512 |
B | FMT515 |
B | HOH606 |
site_id | AE2 |
Number of Residues | 4 |
Details | binding site for residue NA B 507 |
Chain | Residue |
B | SER114 |
B | TYR436 |
B | ASP452 |
B | FMT514 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue NA B 508 |
Chain | Residue |
B | PHE247 |
B | LEU273 |
B | TYR323 |
B | LEU324 |
B | THR325 |
B | FMT513 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue NA B 509 |
Chain | Residue |
B | ASN340 |
B | SER431 |
B | SER432 |
B | GOL503 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue NA B 510 |
Chain | Residue |
B | LEU294 |
B | GLU296 |
B | LYS313 |
B | SER315 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue NA B 511 |
Chain | Residue |
B | GLN185 |
B | GLU202 |
B | GLN206 |
B | HOH610 |
site_id | AE7 |
Number of Residues | 8 |
Details | binding site for residue FMT B 512 |
Chain | Residue |
B | ASN109 |
B | ASN112 |
B | SER114 |
B | GLN197 |
B | HIS435 |
B | NA506 |
B | FMT515 |
B | BME520 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue FMT B 513 |
Chain | Residue |
B | TRP204 |
B | MET208 |
B | PHE247 |
B | LEU273 |
B | GLN274 |
B | THR325 |
B | NA508 |
site_id | AE9 |
Number of Residues | 8 |
Details | binding site for residue FMT B 514 |
Chain | Residue |
B | LEU107 |
B | ASN117 |
B | ALA118 |
B | GLN121 |
B | SER438 |
B | PHE450 |
B | ASP452 |
B | NA507 |
site_id | AF1 |
Number of Residues | 10 |
Details | binding site for residue FMT B 515 |
Chain | Residue |
B | SER114 |
B | GLN197 |
B | SER431 |
B | SER433 |
B | GLY434 |
B | HIS435 |
B | TYR436 |
B | NA506 |
B | FMT512 |
B | HOH606 |
site_id | AF2 |
Number of Residues | 5 |
Details | binding site for residue FMT B 516 |
Chain | Residue |
B | LYS130 |
B | LYS134 |
B | PHE160 |
B | ASP164 |
B | HOH604 |
site_id | AF3 |
Number of Residues | 3 |
Details | binding site for residue FMT B 517 |
Chain | Residue |
B | ARG124 |
B | PRO127 |
B | LYS130 |
site_id | AF4 |
Number of Residues | 3 |
Details | binding site for residue FMT B 518 |
Chain | Residue |
B | LEU286 |
B | PHE287 |
B | PRO350 |
site_id | AF5 |
Number of Residues | 2 |
Details | binding site for residue BME B 519 |
Chain | Residue |
B | GLY111 |
B | GLN194 |
site_id | AF6 |
Number of Residues | 3 |
Details | binding site for residue BME B 520 |
Chain | Residue |
B | ASN109 |
B | ASN112 |
B | FMT512 |
site_id | AF7 |
Number of Residues | 3 |
Details | binding site for residue GOL C 501 |
Chain | Residue |
C | ARG465 |
C | TRP472 |
C | GOL502 |
site_id | AF8 |
Number of Residues | 4 |
Details | binding site for residue GOL C 502 |
Chain | Residue |
C | TRP439 |
C | LYS449 |
C | HIS473 |
C | GOL501 |
site_id | AF9 |
Number of Residues | 4 |
Details | binding site for residue NA C 503 |
Chain | Residue |
C | MET328 |
C | ARG330 |
C | VAL347 |
C | SER467 |
site_id | AG1 |
Number of Residues | 4 |
Details | binding site for residue NA C 504 |
Chain | Residue |
C | PHE247 |
C | LEU273 |
C | TYR323 |
C | THR325 |
site_id | AG2 |
Number of Residues | 4 |
Details | binding site for residue NA C 505 |
Chain | Residue |
C | THR108 |
C | THR113 |
C | ASN117 |
C | PRO172 |
site_id | AG3 |
Number of Residues | 5 |
Details | binding site for residue NA C 506 |
Chain | Residue |
C | SER114 |
C | TYR436 |
C | PHE450 |
C | ASP452 |
C | FMT512 |
site_id | AG4 |
Number of Residues | 4 |
Details | binding site for residue NA C 507 |
Chain | Residue |
C | LYS342 |
C | ILE474 |
C | ALA475 |
C | FMT514 |
site_id | AG5 |
Number of Residues | 5 |
Details | binding site for residue NA C 508 |
Chain | Residue |
C | ARG293 |
C | LEU294 |
C | GLU296 |
C | LYS313 |
C | SER315 |
site_id | AG6 |
Number of Residues | 4 |
Details | binding site for residue NA C 509 |
Chain | Residue |
C | GLN185 |
C | GLU188 |
C | GLN198 |
C | FMT515 |
site_id | AG7 |
Number of Residues | 4 |
Details | binding site for residue NA C 510 |
Chain | Residue |
C | PHE186 |
C | GLU188 |
C | LEU196 |
C | GLN198 |
site_id | AG8 |
Number of Residues | 6 |
Details | binding site for residue FMT C 511 |
Chain | Residue |
C | ASN109 |
C | ASN112 |
C | SER114 |
C | GLN197 |
C | GLY434 |
C | HIS435 |
site_id | AG9 |
Number of Residues | 7 |
Details | binding site for residue FMT C 512 |
Chain | Residue |
C | LEU107 |
C | ALA118 |
C | GLN121 |
C | SER438 |
C | PHE450 |
C | ASP452 |
C | NA506 |
site_id | AH1 |
Number of Residues | 5 |
Details | binding site for residue FMT C 513 |
Chain | Residue |
C | ARG124 |
C | LYS130 |
C | PHE160 |
C | ASP164 |
C | BME518 |
site_id | AH2 |
Number of Residues | 5 |
Details | binding site for residue FMT C 514 |
Chain | Residue |
C | ARG330 |
C | PHE331 |
C | LYS342 |
C | TYR476 |
C | NA507 |
site_id | AH3 |
Number of Residues | 5 |
Details | binding site for residue FMT C 515 |
Chain | Residue |
C | GLU188 |
C | GLN197 |
C | GLN198 |
C | SER432 |
C | NA509 |
site_id | AH4 |
Number of Residues | 9 |
Details | binding site for residue BME C 517 |
Chain | Residue |
C | GLY111 |
C | ASN112 |
C | THR113 |
C | TYR115 |
C | LEU176 |
C | HIS180 |
C | PHE186 |
C | TYR195 |
C | LEU196 |
site_id | AH5 |
Number of Residues | 7 |
Details | binding site for residue BME C 518 |
Chain | Residue |
C | LYS130 |
C | LEU133 |
C | LYS134 |
C | ARG157 |
C | PHE160 |
C | ASP161 |
C | FMT513 |
site_id | AH6 |
Number of Residues | 9 |
Details | binding site for residue GOL D 501 |
Chain | Residue |
D | ASN117 |
D | ALA118 |
D | GLN121 |
D | TYR436 |
D | VAL437 |
D | SER438 |
D | PHE450 |
D | ASP451 |
D | ASP452 |
site_id | AH7 |
Number of Residues | 5 |
Details | binding site for residue GOL D 502 |
Chain | Residue |
B | GLU264 |
D | ILE205 |
D | ASN271 |
D | GLN272 |
D | LEU273 |
site_id | AH8 |
Number of Residues | 4 |
Details | binding site for residue NA D 503 |
Chain | Residue |
D | PHE247 |
D | LEU273 |
D | TYR323 |
D | THR325 |
site_id | AH9 |
Number of Residues | 4 |
Details | binding site for residue NA D 504 |
Chain | Residue |
D | MET328 |
D | ARG330 |
D | VAL347 |
D | SER467 |
site_id | AI1 |
Number of Residues | 4 |
Details | binding site for residue NA D 505 |
Chain | Residue |
D | THR108 |
D | THR113 |
D | ASN117 |
D | PRO172 |
site_id | AI2 |
Number of Residues | 4 |
Details | binding site for residue NA D 506 |
Chain | Residue |
D | PRO171 |
D | ILE173 |
D | ILE174 |
D | FMT509 |
site_id | AI3 |
Number of Residues | 5 |
Details | binding site for residue NA D 507 |
Chain | Residue |
D | ARG465 |
D | LEU466 |
D | GLY468 |
D | TRP472 |
D | HIS473 |
site_id | AI4 |
Number of Residues | 6 |
Details | binding site for residue FMT D 508 |
Chain | Residue |
D | ASN109 |
D | ASN112 |
D | SER114 |
D | GLN197 |
D | GLY434 |
D | HIS435 |
site_id | AI5 |
Number of Residues | 2 |
Details | binding site for residue FMT D 509 |
Chain | Residue |
D | ILE174 |
D | NA506 |
site_id | AI6 |
Number of Residues | 5 |
Details | binding site for residue GOL E 501 |
Chain | Residue |
E | LYS130 |
E | LYS134 |
E | PHE160 |
E | ASP161 |
E | ASP164 |
site_id | AI7 |
Number of Residues | 10 |
Details | binding site for residue GOL E 502 |
Chain | Residue |
E | GLY111 |
E | ASN112 |
E | THR113 |
E | TYR115 |
E | LEU176 |
E | HIS180 |
E | PHE186 |
E | TYR195 |
E | LEU196 |
E | GLN198 |
site_id | AI8 |
Number of Residues | 4 |
Details | binding site for residue NA E 503 |
Chain | Residue |
E | PHE247 |
E | LEU273 |
E | TYR323 |
E | THR325 |
site_id | AI9 |
Number of Residues | 4 |
Details | binding site for residue NA E 504 |
Chain | Residue |
E | THR108 |
E | THR113 |
E | ASN117 |
E | PRO172 |
site_id | AJ1 |
Number of Residues | 4 |
Details | binding site for residue NA E 505 |
Chain | Residue |
E | LEU107 |
E | GLN121 |
E | ASP452 |
E | FMT511 |
site_id | AJ2 |
Number of Residues | 4 |
Details | binding site for residue NA E 506 |
Chain | Residue |
E | GLU270 |
E | GLU296 |
E | SER315 |
E | FMT513 |
site_id | AJ3 |
Number of Residues | 4 |
Details | binding site for residue NA E 507 |
Chain | Residue |
E | ARG465 |
E | GLY468 |
E | TRP472 |
E | HOH671 |
site_id | AJ4 |
Number of Residues | 6 |
Details | binding site for residue NA E 508 |
Chain | Residue |
E | PHE331 |
E | PHE332 |
E | TYR333 |
E | ASN340 |
E | ALA341 |
E | SER431 |
site_id | AJ5 |
Number of Residues | 3 |
Details | binding site for residue NA E 509 |
Chain | Residue |
E | PHE349 |
E | LEU464 |
E | SER467 |
site_id | AJ6 |
Number of Residues | 5 |
Details | binding site for residue FMT E 510 |
Chain | Residue |
E | ASN109 |
E | ASN112 |
E | SER114 |
E | GLN197 |
E | HIS435 |
site_id | AJ7 |
Number of Residues | 7 |
Details | binding site for residue FMT E 511 |
Chain | Residue |
E | ASN117 |
E | ALA118 |
E | TYR436 |
E | SER438 |
E | PHE450 |
E | ASP452 |
E | NA505 |
site_id | AJ8 |
Number of Residues | 6 |
Details | binding site for residue FMT E 512 |
Chain | Residue |
E | ARG330 |
E | LYS342 |
E | HIS426 |
E | ILE474 |
E | ALA475 |
E | TYR476 |
site_id | AJ9 |
Number of Residues | 5 |
Details | binding site for residue FMT E 513 |
Chain | Residue |
E | PHE251 |
E | GLU270 |
E | GLN272 |
E | LEU294 |
E | NA506 |
site_id | AK1 |
Number of Residues | 6 |
Details | binding site for residue FMT E 514 |
Chain | Residue |
A | GLN427 |
A | GLY434 |
A | HIS435 |
E | GLU188 |
E | LYS189 |
E | BME517 |
site_id | AK2 |
Number of Residues | 2 |
Details | binding site for residue BME E 515 |
Chain | Residue |
E | PHE287 |
E | ASP354 |
site_id | AK3 |
Number of Residues | 6 |
Details | binding site for residue BME E 516 |
Chain | Residue |
E | PRO171 |
E | PRO172 |
E | ILE173 |
E | ILE174 |
E | LEU175 |
E | HOH625 |
site_id | AK4 |
Number of Residues | 6 |
Details | binding site for residue BME E 517 |
Chain | Residue |
A | GLN427 |
A | HIS435 |
A | ASP451 |
A | HIS473 |
E | ALA187 |
E | FMT514 |
site_id | AK5 |
Number of Residues | 1 |
Details | binding site for residue EDO E 518 |
Chain | Residue |
E | TYR333 |
site_id | AK6 |
Number of Residues | 4 |
Details | binding site for residue NA F 501 |
Chain | Residue |
F | PHE247 |
F | LEU273 |
F | TYR323 |
F | THR325 |
site_id | AK7 |
Number of Residues | 4 |
Details | binding site for residue NA F 502 |
Chain | Residue |
F | THR108 |
F | THR113 |
F | ASN117 |
F | PRO172 |
site_id | AK8 |
Number of Residues | 4 |
Details | binding site for residue NA F 503 |
Chain | Residue |
F | LEU107 |
F | GLN121 |
F | ASP452 |
F | FMT509 |
site_id | AK9 |
Number of Residues | 4 |
Details | binding site for residue NA F 504 |
Chain | Residue |
F | TRP204 |
F | LEU273 |
F | THR325 |
F | FMT508 |
site_id | AL1 |
Number of Residues | 5 |
Details | binding site for residue NA F 505 |
Chain | Residue |
F | GLY111 |
F | ASN112 |
F | TYR195 |
F | LEU196 |
F | FMT510 |
site_id | AL2 |
Number of Residues | 3 |
Details | binding site for residue NA F 506 |
Chain | Residue |
F | PHE349 |
F | LEU464 |
F | SER467 |
site_id | AL3 |
Number of Residues | 6 |
Details | binding site for residue FMT F 507 |
Chain | Residue |
F | ASN109 |
F | ASN112 |
F | THR113 |
F | SER114 |
F | GLN197 |
F | HIS435 |
site_id | AL4 |
Number of Residues | 3 |
Details | binding site for residue FMT F 508 |
Chain | Residue |
F | ILE205 |
F | LEU273 |
F | NA504 |
site_id | AL5 |
Number of Residues | 8 |
Details | binding site for residue FMT F 509 |
Chain | Residue |
F | SER114 |
F | ASN117 |
F | ALA118 |
F | TYR436 |
F | SER438 |
F | PHE450 |
F | ASP452 |
F | NA503 |
site_id | AL6 |
Number of Residues | 7 |
Details | binding site for residue FMT F 510 |
Chain | Residue |
F | THR113 |
F | TYR115 |
F | LEU176 |
F | HIS180 |
F | PHE186 |
F | GLN198 |
F | NA505 |
site_id | AL7 |
Number of Residues | 3 |
Details | binding site for residue BME F 511 |
Chain | Residue |
F | PHE287 |
F | LEU353 |
F | ASP354 |
Functional Information from PROSITE/UniProt
site_id | PS00973 |
Number of Residues | 19 |
Details | USP_2 Ubiquitin specific protease (USP) domain signature 2. YdLqAVltHqGrssss.GHY |
Chain | Residue | Details |
A | TYR418-TYR436 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Nucleophile => ECO:0000305|PubMed:16211010 |
Chain | Residue | Details |
A | SER114 | |
B | SER114 | |
C | SER114 | |
D | SER114 | |
E | SER114 | |
F | SER114 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10092, ECO:0000255|PROSITE-ProRule:PRU10093 |
Chain | Residue | Details |
A | GLN444 | |
B | GLN444 | |
C | GLN444 | |
D | GLN444 | |
E | GLN444 | |
F | GLN444 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:19367720, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
A | SER143 | |
B | SER143 | |
C | SER143 | |
D | SER143 | |
E | SER143 | |
F | SER143 |
site_id | SWS_FT_FI4 |
Number of Residues | 6 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9JMA1 |
Chain | Residue | Details |
A | SER148 | |
B | SER148 | |
C | SER148 | |
D | SER148 | |
E | SER148 | |
F | SER148 |
site_id | SWS_FT_FI5 |
Number of Residues | 6 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
A | ASP244 | |
B | ASP244 | |
C | ASP244 | |
D | ASP244 | |
E | ASP244 | |
F | ASP244 |
site_id | SWS_FT_FI6 |
Number of Residues | 18 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | PHE246 | |
D | PHE246 | |
D | TYR311 | |
D | LYS441 | |
E | PHE246 | |
E | TYR311 | |
E | LYS441 | |
F | PHE246 | |
F | TYR311 | |
F | LYS441 | |
A | TYR311 | |
A | LYS441 | |
B | PHE246 | |
B | TYR311 | |
B | LYS441 | |
C | PHE246 | |
C | TYR311 | |
C | LYS441 |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | VAL458 | |
B | VAL458 | |
C | VAL458 | |
D | VAL458 | |
E | VAL458 | |
F | VAL458 |