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6LRC

Human cGAS catalytic domain bound with the inhibitor PF-06928215

Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue KHM B 601
ChainResidue
BALA247
BPHE488
BLEU490
BHOH713
BHOH721
BHOH737
BHOH741
BLYS362
BARG376
BLEU377
BSER380
BSER434
BTYR436
BHIS437
BASN482

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN B 602
ChainResidue
BHIS390
BCYS396
BCYS397
BCYS404

site_idAC3
Number of Residues13
Detailsbinding site for residue KHM A 601
ChainResidue
ALYS362
AARG376
ALEU377
ASER380
ASER434
ATYR436
AHIS437
AASN482
APHE488
ALEU490
AHOH732
AHOH740
AHOH742

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 602
ChainResidue
AHIS390
ACYS396
ACYS397
ACYS404

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q8C6L5
ChainResidueDetails
BTHR211
ATHR211

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:30007416, ECO:0007744|PDB:6CTA
ChainResidueDetails
BLYS414
ASER213
ASER380
ALYS414
BSER213
BSER380

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:30007416, ECO:0000305|PubMed:23722159, ECO:0000305|PubMed:26229115, ECO:0007744|PDB:6CT9, ECO:0007744|PDB:6CTA
ChainResidueDetails
AGLU225
AASP227
BASP227
BGLU225

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:30007416, ECO:0007744|PDB:6CT9, ECO:0007744|PDB:6CTA
ChainResidueDetails
AASP319
BASP319

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:24462292, ECO:0000269|PubMed:31113940, ECO:0007744|PDB:4O67, ECO:0007744|PDB:6MJX
ChainResidueDetails
ALYS362
AARG376
BARG376
BLYS362

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:23707061, ECO:0000269|PubMed:24332030, ECO:0000269|PubMed:24462292, ECO:0000269|PubMed:28934246, ECO:0000269|PubMed:28940468, ECO:0000269|PubMed:30007416, ECO:0000269|PubMed:31113940, ECO:0000269|PubMed:31142647, ECO:0000269|PubMed:32911482, ECO:0000269|PubMed:32912999, ECO:0007744|PDB:5V8O, ECO:0007744|PDB:5VDO, ECO:0007744|PDB:5VDP, ECO:0007744|PDB:5VDQ, ECO:0007744|PDB:5VDR, ECO:0007744|PDB:5VDS, ECO:0007744|PDB:5VDT, ECO:0007744|PDB:5VDU, ECO:0007744|PDB:5VDV, ECO:0007744|PDB:5VDW, ECO:0007744|PDB:6CT9, ECO:0007744|PDB:6CTA, ECO:0007744|PDB:6EDB, ECO:0007744|PDB:6EDC, ECO:0007744|PDB:6MJU, ECO:0007744|PDB:6MJW, ECO:0007744|PDB:6MJX, ECO:0007744|PDB:6NAO, ECO:0007744|PDB:6NFG, ECO:0007744|PDB:6NFO, ECO:0007744|PDB:6Y5D, ECO:0007744|PDB:6Y5E, ECO:0007744|PDB:7C0M
ChainResidueDetails
AHIS390
BHIS390

site_idSWS_FT_FI7
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:23707061, ECO:0000269|PubMed:24332030, ECO:0000269|PubMed:24462292, ECO:0000269|PubMed:28934246, ECO:0000269|PubMed:28940468, ECO:0000269|PubMed:30007416, ECO:0000269|PubMed:31113940, ECO:0000269|PubMed:31142647, ECO:0000269|PubMed:32459092, ECO:0000269|PubMed:32911482, ECO:0000269|PubMed:32912999, ECO:0007744|PDB:5V8O, ECO:0007744|PDB:5VDO, ECO:0007744|PDB:5VDP, ECO:0007744|PDB:5VDQ, ECO:0007744|PDB:5VDR, ECO:0007744|PDB:5VDS, ECO:0007744|PDB:5VDT, ECO:0007744|PDB:5VDU, ECO:0007744|PDB:5VDV, ECO:0007744|PDB:5VDW, ECO:0007744|PDB:6CT9, ECO:0007744|PDB:6CTA, ECO:0007744|PDB:6EDB, ECO:0007744|PDB:6EDC, ECO:0007744|PDB:6LRC, ECO:0007744|PDB:6MJU, ECO:0007744|PDB:6MJW, ECO:0007744|PDB:6MJX, ECO:0007744|PDB:6NAO, ECO:0007744|PDB:6NFG, ECO:0007744|PDB:6NFO, ECO:0007744|PDB:6O47, ECO:0007744|PDB:6Y5D, ECO:0007744|PDB:6Y5E, ECO:0007744|PDB:7C0M
ChainResidueDetails
BCYS404
ACYS396
ACYS397
ACYS404
BCYS396
BCYS397

site_idSWS_FT_FI8
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:30007416, ECO:0000305|PubMed:24462292, ECO:0007744|PDB:6CTA
ChainResidueDetails
ASER435
BSER435

site_idSWS_FT_FI9
Number of Residues2
DetailsSITE: Cleavage; by CASP1 => ECO:0000269|PubMed:28314590
ChainResidueDetails
AASP157
BASP157

site_idSWS_FT_FI10
Number of Residues4
DetailsSITE: Important for preferential detection of curved long DNA => ECO:0000269|PubMed:30007416
ChainResidueDetails
BLEU195
ALYS187
ALEU195
BLYS187

site_idSWS_FT_FI11
Number of Residues2
DetailsSITE: Arginine-anchor => ECO:0000269|PubMed:32911482, ECO:0000269|PubMed:32912999, ECO:0000269|PubMed:33051594
ChainResidueDetails
BARG255
AARG255

site_idSWS_FT_FI12
Number of Residues2
DetailsSITE: Cleavage; by CASP3 => ECO:0000269|PubMed:30878284
ChainResidueDetails
AASP319
BASP319

site_idSWS_FT_FI13
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl aspartic acid => ECO:0000269|PubMed:35460603
ChainResidueDetails
AASP191
BASP191

site_idSWS_FT_FI14
Number of Residues4
DetailsMOD_RES: (Microbial infection) Deamidated asparagine; by herpes simplex virus 1/HHV-1 UL37 => ECO:0000269|PubMed:30092200
ChainResidueDetails
AASN210
AASN389
BASN389
BASN210

site_idSWS_FT_FI15
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:33273464
ChainResidueDetails
ASER213
BSER213

site_idSWS_FT_FI16
Number of Residues2
DetailsMOD_RES: Phosphotyrosine; by BLK => ECO:0000269|PubMed:30356214
ChainResidueDetails
BTYR215
ATYR215

site_idSWS_FT_FI17
Number of Residues2
DetailsMOD_RES: 5-glutamyl polyglutamate => ECO:0000250|UniProtKB:Q8C6L5
ChainResidueDetails
BGLU286
AGLU286

site_idSWS_FT_FI18
Number of Residues2
DetailsMOD_RES: Phosphoserine; by CDK1 and PKB => ECO:0000269|PubMed:26440888, ECO:0000269|PubMed:32351706, ECO:0000269|PubMed:33542149
ChainResidueDetails
BSER305
ASER305

site_idSWS_FT_FI19
Number of Residues2
DetailsMOD_RES: 5-glutamyl glutamate => ECO:0000250|UniProtKB:Q8C6L5
ChainResidueDetails
BGLU314
AGLU314

site_idSWS_FT_FI20
Number of Residues6
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:30799039
ChainResidueDetails
BLYS394
ALYS384
ALYS392
ALYS394
BLYS384
BLYS392

site_idSWS_FT_FI21
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:30799039, ECO:0007744|PubMed:19608861
ChainResidueDetails
BLYS414
ALYS414

site_idSWS_FT_FI22
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:32474700
ChainResidueDetails
BSER434
BSER435
ASER434
ASER435

site_idSWS_FT_FI23
Number of Residues4
DetailsMOD_RES: (Microbial infection) Deamidated glutamine; by herpes simplex virus 1/HHV-1 UL37 => ECO:0000269|PubMed:30092200
ChainResidueDetails
AGLN451
AGLN454
BGLN451
BGLN454

site_idSWS_FT_FI24
Number of Residues2
DetailsMOD_RES: N6-methyllysine => ECO:0000269|PubMed:35210392
ChainResidueDetails
BLYS506
ALYS506

site_idSWS_FT_FI25
Number of Residues4
DetailsLIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:37802025
ChainResidueDetails
ACYS404
ACYS405
BCYS404
BCYS405

site_idSWS_FT_FI26
Number of Residues2
DetailsLIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:35438208
ChainResidueDetails
BCYS474
ACYS474

site_idSWS_FT_FI27
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:28273161
ChainResidueDetails
BLYS173
ALYS173

site_idSWS_FT_FI28
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:27637147
ChainResidueDetails
ALYS479
BLYS479

site_idSWS_FT_FI29
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:27637147
ChainResidueDetails
BLYS231
ALYS231

site_idSWS_FT_FI30
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:27637147
ChainResidueDetails
BLYS285
ALYS285

site_idSWS_FT_FI31
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:Q8C6L5
ChainResidueDetails
BLYS347
ALYS347

site_idSWS_FT_FI32
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:28273161
ChainResidueDetails
BLYS384
ALYS384

site_idSWS_FT_FI33
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000250|UniProtKB:Q8C6L5
ChainResidueDetails
BLYS394
ALYS394

site_idSWS_FT_FI34
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:35503863
ChainResidueDetails
BLYS411
ALYS411

site_idSWS_FT_FI35
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:27666593
ChainResidueDetails
BLYS414
ALYS414

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PDB entries from 2024-06-12

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