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6LI2

Crystal structure of GPR52 ligand free form with rubredoxin fusion

Functional Information from GO Data
ChainGOidnamespacecontents
A0004930molecular_functionG protein-coupled receptor activity
A0005506molecular_functioniron ion binding
A0007186biological_processG protein-coupled receptor signaling pathway
A0009055molecular_functionelectron transfer activity
A0016020cellular_componentmembrane
A0043448biological_processalkane catabolic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1201
ChainResidue
ACYS1006
ACYS1009
ACYS1039
ACYS1042

site_idAC2
Number of Residues4
Detailsbinding site for residue OLC A 1202
ChainResidue
ASER272
AVAL273
AMET276
ALEU277

site_idAC3
Number of Residues2
Detailsbinding site for residue OLC A 1203
ChainResidue
AHOH1301
AILE316

site_idAC4
Number of Residues5
Detailsbinding site for residue OLC A 1204
ChainResidue
AVAL37
AVAL39
AILE41
ATHR44
AHIS103

site_idAC5
Number of Residues5
Detailsbinding site for residue OLC A 1205
ChainResidue
ATYR202
ASER289
ALEU328
AARG329
ASER332

site_idAC6
Number of Residues5
Detailsbinding site for residue OLC A 1206
ChainResidue
ATHR60
AVAL64
ATHR323
APHE324
AGLY327

site_idAC7
Number of Residues3
Detailsbinding site for residue OLC A 1207
ChainResidue
ATHR60
AVAL64
AOLC1208

site_idAC8
Number of Residues1
Detailsbinding site for residue OLC A 1208
ChainResidue
AOLC1207

site_idAC9
Number of Residues3
Detailsbinding site for residue OLC A 1210
ChainResidue
ATRP180
ATYR202
ACYS209

site_idAD1
Number of Residues3
Detailsbinding site for residue OLC A 1211
ChainResidue
AHIS33
AASP38
APHE42

site_idAD2
Number of Residues2
Detailsbinding site for residue OLC A 1212
ChainResidue
ATHR297
ALEU301

site_idAD3
Number of Residues3
Detailsbinding site for residue PEG A 1213
ChainResidue
AARG24
AGLU191
AASP1036

Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues23
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cts..CmefLevlfqgphHhhhhhH
ChainResidueDetails
ACYS336-HIS618

site_idPS00202
Number of Residues11
DetailsRUBREDOXIN Rubredoxin signature. IpDDWvCPlCG
ChainResidueDetails
AILE1033-GLY1043

site_idPS00237
Number of Residues17
DetailsG_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. VSMwCLACISVDRYLaI
ChainResidueDetails
AVAL127-ILE143

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues53
DetailsDomain: {"description":"Rubredoxin-like","evidences":[{"source":"PROSITE-ProRule","id":"PRU00241","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00241","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"10216292","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"N-formylmethionine","evidences":[{"source":"PubMed","id":"1637309","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=1","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=2","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues38
DetailsTopological domain: {"description":"Extracellular","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=3","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues21
DetailsTopological domain: {"description":"Cytoplasmic","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=4","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=5","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=6","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=7","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

244349

PDB entries from 2025-11-05

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