6LDR
Structure of a K245A mutant of a Group II PLP dependent decarboxylase from Methanocaldococcus jannaschii, in complex with PLP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004068 | molecular_function | aspartate 1-decarboxylase activity |
| A | 0004837 | molecular_function | tyrosine decarboxylase activity |
| A | 0015937 | biological_process | coenzyme A biosynthetic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016830 | molecular_function | carbon-carbon lyase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| A | 0019752 | biological_process | carboxylic acid metabolic process |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| A | 2001120 | biological_process | methanofuran biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 16 |
| Details | binding site for residue PLP A 401 |
| Chain | Residue |
| A | MET37 |
| A | ASP242 |
| A | HIS244 |
| A | THR285 |
| A | HOH506 |
| A | HOH511 |
| A | HOH522 |
| A | HOH682 |
| A | GLY93 |
| A | GLY94 |
| A | THR95 |
| A | ASN98 |
| A | HIS132 |
| A | THR181 |
| A | ASP206 |
| A | ALA208 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue NH4 A 402 |
| Chain | Residue |
| A | SER36 |
| A | ASN56 |
| A | ASP59 |
| A | HOH647 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 403 |
| Chain | Residue |
| A | ASP260 |
| A | GLY262 |
| A | TYR263 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 404 |
| Chain | Residue |
| A | LYS112 |
| A | LEU117 |
| A | SER118 |
| A | ASN120 |
| A | ASP170 |
| A | VAL171 |
| A | ASP172 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 405 |
| Chain | Residue |
| A | ASN316 |
| A | LYS379 |
| A | ARG380 |
| A | HOH501 |
| A | HOH505 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-(pyridoxal phosphate)lysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01610","evidenceCode":"ECO:0000255"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"NOV-2008","submissionDatabase":"PDB data bank","title":"Crystal structure of L-tyrosine decarboxylase MfnA (EC 4.1.1.25) (NP_247014.1) from Methanococcus jannaschii at 2.11 A resolution.","authoringGroup":["Joint Center for Structural Genomics (JCSG)"]}}]} |
| Chain | Residue | Details |
