6LDC
Structure of Bifidobacterium dentium beta-glucuronidase complexed with C6-nonyl uronic isofagomine
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| A | 0004565 | molecular_function | beta-galactosidase activity |
| A | 0004566 | molecular_function | beta-glucuronidase activity |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0030246 | molecular_function | carbohydrate binding |
| B | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| B | 0004565 | molecular_function | beta-galactosidase activity |
| B | 0004566 | molecular_function | beta-glucuronidase activity |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0030246 | molecular_function | carbohydrate binding |
| C | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| C | 0004565 | molecular_function | beta-galactosidase activity |
| C | 0004566 | molecular_function | beta-glucuronidase activity |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| C | 0030246 | molecular_function | carbohydrate binding |
| D | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| D | 0004565 | molecular_function | beta-galactosidase activity |
| D | 0004566 | molecular_function | beta-glucuronidase activity |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| D | 0030246 | molecular_function | carbohydrate binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 15 |
| Details | binding site for residue E9O A 701 |
| Chain | Residue |
| A | MET153 |
| A | PHE624 |
| A | ARG632 |
| A | ASN636 |
| A | LYS638 |
| A | HOH856 |
| A | HOH989 |
| A | ASP179 |
| A | HIS413 |
| A | GLU479 |
| A | TYR539 |
| A | TYR543 |
| A | ASN544 |
| A | GLU574 |
| A | TRP619 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | binding site for residue E9O B 701 |
| Chain | Residue |
| B | MET153 |
| B | ASP179 |
| B | HIS413 |
| B | GLU479 |
| B | GLN519 |
| B | TYR539 |
| B | TYR543 |
| B | GLU574 |
| B | TRP619 |
| B | PHE624 |
| B | ARG632 |
| B | ASN636 |
| B | LYS638 |
| B | HOH837 |
| B | HOH892 |
| site_id | AC3 |
| Number of Residues | 14 |
| Details | binding site for residue E9O C 701 |
| Chain | Residue |
| C | ASP179 |
| C | HIS413 |
| C | GLU479 |
| C | TYR539 |
| C | TYR543 |
| C | ASN544 |
| C | GLU574 |
| C | TRP619 |
| C | PHE624 |
| C | ARG632 |
| C | ASN636 |
| C | LYS638 |
| C | HOH939 |
| C | HOH1050 |
| site_id | AC4 |
| Number of Residues | 14 |
| Details | binding site for residue E9O D 701 |
| Chain | Residue |
| D | ASP179 |
| D | HIS413 |
| D | GLU479 |
| D | TYR539 |
| D | TYR543 |
| D | ASN544 |
| D | GLU574 |
| D | TRP619 |
| D | PHE624 |
| D | ARG632 |
| D | ASN636 |
| D | LYS638 |
| D | HOH806 |
| D | HOH831 |
Functional Information from PROSITE/UniProt
| site_id | PS00608 |
| Number of Residues | 15 |
| Details | GLYCOSYL_HYDROL_F2_2 Glycosyl hydrolases family 2 acid/base catalyst. DKNHPCIVMWSia.NE |
| Chain | Residue | Details |
| A | ASP465-GLU479 |
| site_id | PS00719 |
| Number of Residues | 26 |
| Details | GLYCOSYL_HYDROL_F2_1 Glycosyl hydrolases family 2 signature 1. NsFRTSHYPyaesMYdlcDreGIVII |
| Chain | Residue | Details |
| A | ASN407-ILE432 |
